Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SSR1P43307 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SSR1P43307 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SSR1P43307 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SSR1P43307 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SSR1P43307 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.63■□□□□ 0.41
SSR1P43307 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SSR1P43307 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
SSR1P43307 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SSR1P43307 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.63■□□□□ 0.41
SSR1P43307 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SSR1P43307 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SSR1P43307 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.62■□□□□ 0.41
SSR1P43307 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 LINC02199-201ENST00000506655 2702 ntBASIC17.62■□□□□ 0.41
SSR1P43307 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
SSR1P43307 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.62■□□□□ 0.41
SSR1P43307 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.62■□□□□ 0.41
SSR1P43307 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.62■□□□□ 0.41
SSR1P43307 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SSR1P43307 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.62■□□□□ 0.41
SSR1P43307 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.62■□□□□ 0.41
SSR1P43307 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.62■□□□□ 0.41
SSR1P43307 FAM197Y8-203ENST00000450145 560 ntBASIC17.62■□□□□ 0.41
SSR1P43307 HLA-J-202ENST00000469281 1241 ntBASIC17.62■□□□□ 0.41
SSR1P43307 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.62■□□□□ 0.41
SSR1P43307 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.62■□□□□ 0.41
SSR1P43307 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.62■□□□□ 0.41
SSR1P43307 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.62■□□□□ 0.41
SSR1P43307 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SSR1P43307 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSR1P43307 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SSR1P43307 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SSR1P43307 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
SSR1P43307 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.61■□□□□ 0.41
SSR1P43307 SLC25A6P2-201ENST00000497974 877 ntBASIC17.61■□□□□ 0.41
SSR1P43307 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
SSR1P43307 MPDU1-223ENST00000582151 728 ntBASIC17.61■□□□□ 0.41
SSR1P43307 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.61■□□□□ 0.41
SSR1P43307 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SSR1P43307 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.61■□□□□ 0.41
SSR1P43307 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 AL365209.1-201ENST00000624418 6473 ntBASIC17.61■□□□□ 0.41
SSR1P43307 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.61■□□□□ 0.41
SSR1P43307 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 AL671710.1-201ENST00000610245 2349 ntBASIC17.61■□□□□ 0.41
SSR1P43307 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SSR1P43307 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SSR1P43307 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC17.61■□□□□ 0.41
SSR1P43307 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSR1P43307 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.6■□□□□ 0.41
SSR1P43307 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC17.6■□□□□ 0.41
SSR1P43307 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.6■□□□□ 0.41
SSR1P43307 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SSR1P43307 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SSR1P43307 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SSR1P43307 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC17.6■□□□□ 0.41
SSR1P43307 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSR1P43307 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SSR1P43307 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.6■□□□□ 0.41
SSR1P43307 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms