Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.82■□□□□ 0.6
SMARCA1P28370 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.82■□□□□ 0.6
SMARCA1P28370 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.82■□□□□ 0.6
SMARCA1P28370 MIR4453-201ENST00000584019 89 ntBASIC18.82■□□□□ 0.6
SMARCA1P28370 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.82■□□□□ 0.6
SMARCA1P28370 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.82■□□□□ 0.6
SMARCA1P28370 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.82■□□□□ 0.6
SMARCA1P28370 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.82■□□□□ 0.6
SMARCA1P28370 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCA1P28370 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCA1P28370 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCA1P28370 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.81■□□□□ 0.6
SMARCA1P28370 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
SMARCA1P28370 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SMARCA1P28370 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SMARCA1P28370 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.81■□□□□ 0.6
SMARCA1P28370 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
SMARCA1P28370 RFPL4AP1-201ENST00000530883 850 ntBASIC18.81■□□□□ 0.6
SMARCA1P28370 MIR6080-201ENST00000617359 66 ntBASIC18.81■□□□□ 0.6
SMARCA1P28370 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.81■□□□□ 0.6
SMARCA1P28370 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.81■□□□□ 0.6
SMARCA1P28370 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.81■□□□□ 0.6
SMARCA1P28370 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.81■□□□□ 0.6
SMARCA1P28370 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMARCA1P28370 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCA1P28370 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.81■□□□□ 0.6
SMARCA1P28370 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.81■□□□□ 0.6
SMARCA1P28370 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SMARCA1P28370 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SMARCA1P28370 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 AC006449.6-201ENST00000612330 2296 ntBASIC18.8■□□□□ 0.6
SMARCA1P28370 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCA1P28370 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.8■□□□□ 0.6
SMARCA1P28370 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.8■□□□□ 0.6
SMARCA1P28370 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCA1P28370 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 KLF2P3-201ENST00000451977 1087 ntBASIC18.8■□□□□ 0.6
SMARCA1P28370 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.8■□□□□ 0.6
SMARCA1P28370 BANF1P1-201ENST00000553684 263 ntBASIC18.8■□□□□ 0.6
SMARCA1P28370 AC140878.1-201ENST00000565277 250 ntBASIC18.8■□□□□ 0.6
SMARCA1P28370 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCA1P28370 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCA1P28370 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.8■□□□□ 0.6
SMARCA1P28370 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.8■□□□□ 0.6
SMARCA1P28370 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCA1P28370 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCA1P28370 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCA1P28370 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCA1P28370 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SMARCA1P28370 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCA1P28370 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SMARCA1P28370 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.79■□□□□ 0.6
SMARCA1P28370 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCA1P28370 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
SMARCA1P28370 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.79■□□□□ 0.6
SMARCA1P28370 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SMARCA1P28370 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SMARCA1P28370 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SMARCA1P28370 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.79■□□□□ 0.6
SMARCA1P28370 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.79■□□□□ 0.6
SMARCA1P28370 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCA1P28370 FAM86GP-201ENST00000448322 971 ntBASIC18.79■□□□□ 0.6
SMARCA1P28370 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms