Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 IGHV3-42-201ENST00000520410 361 ntBASIC13.86□□□□□ -0.19
ABCA1O95477 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
ABCA1O95477 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 BOC-212ENST00000485230 2173 ntTSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC13.86□□□□□ -0.19
ABCA1O95477 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
ABCA1O95477 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
ABCA1O95477 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.85□□□□□ -0.19
ABCA1O95477 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
ABCA1O95477 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
ABCA1O95477 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC13.85□□□□□ -0.19
ABCA1O95477 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC13.85□□□□□ -0.19
ABCA1O95477 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.85□□□□□ -0.19
ABCA1O95477 HILS1-202ENST00000545329 423 ntBASIC13.85□□□□□ -0.19
ABCA1O95477 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
ABCA1O95477 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
ABCA1O95477 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
ABCA1O95477 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.85□□□□□ -0.19
ABCA1O95477 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.85□□□□□ -0.19
ABCA1O95477 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.85□□□□□ -0.19
ABCA1O95477 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.85□□□□□ -0.19
ABCA1O95477 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
ABCA1O95477 AC011676.5-201ENST00000624864 2660 ntBASIC13.85□□□□□ -0.19
ABCA1O95477 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 AC084018.2-201ENST00000613093 2607 ntBASIC13.85□□□□□ -0.19
ABCA1O95477 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
ABCA1O95477 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA1O95477 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA1O95477 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.84□□□□□ -0.19
ABCA1O95477 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.84□□□□□ -0.19
ABCA1O95477 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA1O95477 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
ABCA1O95477 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA1O95477 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.84□□□□□ -0.19
ABCA1O95477 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.84□□□□□ -0.19
ABCA1O95477 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.84□□□□□ -0.19
ABCA1O95477 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC13.84□□□□□ -0.19
ABCA1O95477 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA1O95477 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA1O95477 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA1O95477 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC13.84□□□□□ -0.19
ABCA1O95477 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
ABCA1O95477 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA1O95477 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.84□□□□□ -0.19
ABCA1O95477 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC13.84□□□□□ -0.19
ABCA1O95477 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms