Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.15■□□□□ 0.18
SIX3O95343 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 LINC00554-201ENST00000564841 3011 ntBASIC16.15■□□□□ 0.18
SIX3O95343 RPS2P28-201ENST00000314255 741 ntBASIC16.15■□□□□ 0.18
SIX3O95343 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 FAM185BP-201ENST00000443595 716 ntBASIC16.15■□□□□ 0.18
SIX3O95343 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.15■□□□□ 0.18
SIX3O95343 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.15■□□□□ 0.18
SIX3O95343 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
SIX3O95343 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.15■□□□□ 0.18
SIX3O95343 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SIX3O95343 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.15■□□□□ 0.18
SIX3O95343 MIR7706-201ENST00000613747 67 ntBASIC16.15■□□□□ 0.18
SIX3O95343 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.15■□□□□ 0.18
SIX3O95343 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.15■□□□□ 0.18
SIX3O95343 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.15■□□□□ 0.18
SIX3O95343 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SIX3O95343 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SIX3O95343 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SIX3O95343 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.15■□□□□ 0.18
SIX3O95343 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX3O95343 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.14■□□□□ 0.18
SIX3O95343 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.14■□□□□ 0.18
SIX3O95343 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.14■□□□□ 0.17
SIX3O95343 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.14■□□□□ 0.17
SIX3O95343 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SIX3O95343 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SIX3O95343 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.14■□□□□ 0.17
SIX3O95343 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.14■□□□□ 0.17
SIX3O95343 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
SIX3O95343 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.14■□□□□ 0.17
SIX3O95343 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SIX3O95343 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SIX3O95343 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SIX3O95343 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.14■□□□□ 0.17
SIX3O95343 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX3O95343 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SIX3O95343 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.13■□□□□ 0.17
SIX3O95343 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SIX3O95343 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.13■□□□□ 0.17
SIX3O95343 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.13■□□□□ 0.17
SIX3O95343 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
SIX3O95343 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.13■□□□□ 0.17
SIX3O95343 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.13■□□□□ 0.17
SIX3O95343 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 MIR4751-201ENST00000578027 74 ntBASIC16.13■□□□□ 0.17
SIX3O95343 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.13■□□□□ 0.17
SIX3O95343 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.13■□□□□ 0.17
SIX3O95343 AC020765.3-201ENST00000613051 740 ntBASIC16.13■□□□□ 0.17
SIX3O95343 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SIX3O95343 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms