Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.56□□□□□ -0.08
LMX1BO60663 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.55□□□□□ -0.08
LMX1BO60663 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.55□□□□□ -0.08
LMX1BO60663 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
LMX1BO60663 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.55□□□□□ -0.08
LMX1BO60663 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC14.55□□□□□ -0.08
LMX1BO60663 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.55□□□□□ -0.08
LMX1BO60663 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.55□□□□□ -0.08
LMX1BO60663 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC14.55□□□□□ -0.08
LMX1BO60663 KRT18P27-201ENST00000427733 1299 ntBASIC14.55□□□□□ -0.08
LMX1BO60663 PAWRP1-201ENST00000451083 565 ntBASIC14.55□□□□□ -0.08
LMX1BO60663 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.55□□□□□ -0.08
LMX1BO60663 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.55□□□□□ -0.08
LMX1BO60663 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.55□□□□□ -0.08
LMX1BO60663 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
LMX1BO60663 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
LMX1BO60663 PKD1P5-201ENST00000532415 10291 ntBASIC14.55□□□□□ -0.08
LMX1BO60663 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.55□□□□□ -0.08
LMX1BO60663 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 TOP3BP1-201ENST00000420768 1380 ntBASIC14.55□□□□□ -0.08
LMX1BO60663 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.55□□□□□ -0.08
LMX1BO60663 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LMX1BO60663 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LMX1BO60663 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
LMX1BO60663 MTHFR-217ENST00000641820 1569 ntBASIC14.55□□□□□ -0.08
LMX1BO60663 AC022188.1-201ENST00000620960 1664 ntBASIC14.55□□□□□ -0.08
LMX1BO60663 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC14.55□□□□□ -0.08
LMX1BO60663 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LMX1BO60663 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.54□□□□□ -0.08
LMX1BO60663 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.54□□□□□ -0.08
LMX1BO60663 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.54□□□□□ -0.08
LMX1BO60663 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC14.54□□□□□ -0.08
LMX1BO60663 PTCHD3P3-201ENST00000403073 906 ntBASIC14.54□□□□□ -0.08
LMX1BO60663 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.54□□□□□ -0.08
LMX1BO60663 MCCD1P2-201ENST00000423228 335 ntBASIC14.54□□□□□ -0.08
LMX1BO60663 METTL21AP1-201ENST00000438852 635 ntBASIC14.54□□□□□ -0.08
LMX1BO60663 AC087163.2-201ENST00000457299 853 ntBASIC14.54□□□□□ -0.08
LMX1BO60663 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.54□□□□□ -0.08
LMX1BO60663 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC14.54□□□□□ -0.08
LMX1BO60663 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC14.54□□□□□ -0.08
LMX1BO60663 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC14.54□□□□□ -0.08
LMX1BO60663 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LMX1BO60663 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 AC002310.6-201ENST00000624451 1377 ntBASIC14.54□□□□□ -0.08
LMX1BO60663 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 PC-214ENST00000628663 1470 ntTSL 5 BASIC14.54□□□□□ -0.08
LMX1BO60663 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 AL365203.3-201ENST00000609742 2057 ntBASIC14.54□□□□□ -0.08
LMX1BO60663 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.54□□□□□ -0.08
LMX1BO60663 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LMX1BO60663 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms