Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.91■□□□□ 0.14
SLC28A1O00337 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
SLC28A1O00337 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.91■□□□□ 0.14
SLC28A1O00337 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.91■□□□□ 0.14
SLC28A1O00337 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
SLC28A1O00337 AF186996.4-201ENST00000467186 377 ntBASIC15.91■□□□□ 0.14
SLC28A1O00337 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.91■□□□□ 0.14
SLC28A1O00337 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.91■□□□□ 0.14
SLC28A1O00337 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.91■□□□□ 0.14
SLC28A1O00337 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.91■□□□□ 0.14
SLC28A1O00337 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.91■□□□□ 0.14
SLC28A1O00337 MIR4515-201ENST00000584082 81 ntBASIC15.91■□□□□ 0.14
SLC28A1O00337 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.91■□□□□ 0.14
SLC28A1O00337 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.91■□□□□ 0.14
SLC28A1O00337 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
SLC28A1O00337 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.91■□□□□ 0.14
SLC28A1O00337 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.91■□□□□ 0.14
SLC28A1O00337 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
SLC28A1O00337 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SLC28A1O00337 AP002414.3-201ENST00000589352 1468 ntBASIC15.91■□□□□ 0.14
SLC28A1O00337 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.9■□□□□ 0.14
SLC28A1O00337 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
SLC28A1O00337 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
SLC28A1O00337 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.9■□□□□ 0.14
SLC28A1O00337 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
SLC28A1O00337 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 AC105917.1-201ENST00000506637 2539 ntBASIC15.9■□□□□ 0.14
SLC28A1O00337 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.9■□□□□ 0.14
SLC28A1O00337 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.9■□□□□ 0.14
SLC28A1O00337 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
SLC28A1O00337 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.9■□□□□ 0.14
SLC28A1O00337 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.9■□□□□ 0.14
SLC28A1O00337 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.9■□□□□ 0.14
SLC28A1O00337 AC018712.1-201ENST00000455767 687 ntBASIC15.9■□□□□ 0.14
SLC28A1O00337 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.9■□□□□ 0.14
SLC28A1O00337 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.9■□□□□ 0.14
SLC28A1O00337 UNC93B7-201ENST00000509439 705 ntBASIC15.9■□□□□ 0.14
SLC28A1O00337 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.9■□□□□ 0.14
SLC28A1O00337 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.9■□□□□ 0.14
SLC28A1O00337 AL121912.1-201ENST00000603683 238 ntBASIC15.9■□□□□ 0.14
SLC28A1O00337 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 AC004790.2-201ENST00000623588 572 ntBASIC15.9■□□□□ 0.14
SLC28A1O00337 TP73-AS1-207ENST00000624167 988 ntBASIC15.9■□□□□ 0.14
SLC28A1O00337 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.9■□□□□ 0.14
SLC28A1O00337 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
SLC28A1O00337 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.9■□□□□ 0.14
SLC28A1O00337 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.9■□□□□ 0.14
SLC28A1O00337 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.9■□□□□ 0.14
SLC28A1O00337 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SLC28A1O00337 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.14
SLC28A1O00337 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
SLC28A1O00337 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SLC28A1O00337 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SLC28A1O00337 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.89■□□□□ 0.13
SLC28A1O00337 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SLC28A1O00337 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.89■□□□□ 0.13
SLC28A1O00337 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
SLC28A1O00337 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SLC28A1O00337 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.89■□□□□ 0.13
SLC28A1O00337 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.89■□□□□ 0.13
SLC28A1O00337 AC005622.1-201ENST00000636801 1703 ntBASIC15.89■□□□□ 0.13
SLC28A1O00337 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SLC28A1O00337 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SLC28A1O00337 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SLC28A1O00337 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.89■□□□□ 0.13
SLC28A1O00337 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.89■□□□□ 0.13
SLC28A1O00337 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SLC28A1O00337 MIR648-201ENST00000385046 94 ntBASIC15.89■□□□□ 0.13
SLC28A1O00337 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
SLC28A1O00337 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.89■□□□□ 0.13
SLC28A1O00337 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SLC28A1O00337 FAM185BP-201ENST00000443595 716 ntBASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms