Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RPSAP31-201ENST00000416648 895 ntBASIC12.56□□□□□ -0.4
COL6A5A8TX70 RPL13P2-201ENST00000440687 659 ntBASIC12.56□□□□□ -0.4
COL6A5A8TX70 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 COX5BP1-201ENST00000507622 393 ntBASIC12.55□□□□□ -0.4
COL6A5A8TX70 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 AC009084.3-201ENST00000623356 437 ntBASIC12.55□□□□□ -0.4
COL6A5A8TX70 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 Z97205.2-201ENST00000564697 1639 ntBASIC12.55□□□□□ -0.4
COL6A5A8TX70 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 BRF1-202ENST00000379932 884 ntTSL 5 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 TOMM22P5-201ENST00000416399 439 ntBASIC12.55□□□□□ -0.4
COL6A5A8TX70 IDS-203ENST00000428056 1213 ntTSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 CTBP2P4-201ENST00000513884 920 ntBASIC12.55□□□□□ -0.4
COL6A5A8TX70 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 AC023310.1-201ENST00000554836 735 ntBASIC12.55□□□□□ -0.4
COL6A5A8TX70 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL6A5A8TX70 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC12.55□□□□□ -0.4
COL6A5A8TX70 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 NKG7-204ENST00000595217 816 ntTSL 2 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL6A5A8TX70 DNAJB1P1-201ENST00000429417 1024 ntBASIC12.54□□□□□ -0.4
COL6A5A8TX70 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 AL596276.2-201ENST00000447525 331 ntBASIC12.54□□□□□ -0.4
COL6A5A8TX70 AL139010.1-201ENST00000454878 894 ntBASIC12.54□□□□□ -0.4
COL6A5A8TX70 SUPT4H1P2-201ENST00000501248 353 ntBASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms