Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 TERC-201ENST00000602385 541 ntBASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CCDC39Q9UFE4 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 UNC93B7-201ENST00000509439 705 ntBASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 AC025062.2-201ENST00000605477 670 ntBASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC39Q9UFE4 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 LAGE3P1-201ENST00000425356 484 ntBASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 AC073648.2-201ENST00000510116 352 ntBASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 AC006557.2-201ENST00000592985 1240 ntBASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC39Q9UFE4 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC39Q9UFE4 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC39Q9UFE4 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC39Q9UFE4 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC39Q9UFE4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC39Q9UFE4 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms