Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 AC063926.2-201ENST00000623766 1308 ntBASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 AC116353.5-201ENST00000638148 1699 ntBASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 LINC00895-201ENST00000629028 1637 ntBASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 AC142381.1-201ENST00000426099 345 ntBASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 AC241585.1-201ENST00000433527 519 ntBASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 AC105233.2-201ENST00000523697 349 ntBASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 AF228730.5-201ENST00000530288 346 ntBASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 AC005225.4-201ENST00000557330 545 ntBASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.5■□□□□ 0.23
TM9SF3Q9HD45 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 AGGF1P2-201ENST00000426656 2106 ntBASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 OR6D1P-203ENST00000641209 4860 ntBASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 KRT18P34-201ENST00000488218 1270 ntBASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 AC027369.6-201ENST00000525520 931 ntBASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 RARRES2P9-201ENST00000565168 469 ntBASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 AC018529.1-201ENST00000613063 361 ntBASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 AC073592.8-201ENST00000624126 511 ntBASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
TM9SF3Q9HD45 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms