Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC14.19□□□□□ -0.14
COL12A1Q99715 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 AC061975.2-201ENST00000581722 295 ntBASIC14.19□□□□□ -0.14
COL12A1Q99715 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC14.19□□□□□ -0.14
COL12A1Q99715 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC14.19□□□□□ -0.14
COL12A1Q99715 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
COL12A1Q99715 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 SOCS2P1-201ENST00000417727 557 ntBASIC14.18□□□□□ -0.14
COL12A1Q99715 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.18□□□□□ -0.14
COL12A1Q99715 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.18□□□□□ -0.14
COL12A1Q99715 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.18□□□□□ -0.14
COL12A1Q99715 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.18□□□□□ -0.14
COL12A1Q99715 EEF1DP1-201ENST00000585891 896 ntBASIC14.18□□□□□ -0.14
COL12A1Q99715 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL12A1Q99715 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.18□□□□□ -0.14
COL12A1Q99715 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.18□□□□□ -0.14
COL12A1Q99715 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
COL12A1Q99715 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 KRT8P37-201ENST00000451609 1420 ntBASIC14.18□□□□□ -0.14
COL12A1Q99715 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 AC069218.1-201ENST00000435269 762 ntBASIC14.18□□□□□ -0.14
COL12A1Q99715 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.18□□□□□ -0.14
COL12A1Q99715 ENPP7P5-201ENST00000541031 1031 ntBASIC14.18□□□□□ -0.14
COL12A1Q99715 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.18□□□□□ -0.14
COL12A1Q99715 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.18□□□□□ -0.14
COL12A1Q99715 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.18□□□□□ -0.14
COL12A1Q99715 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 AL589702.1-201ENST00000641229 1509 ntBASIC14.18□□□□□ -0.14
COL12A1Q99715 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.18□□□□□ -0.14
COL12A1Q99715 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC14.18□□□□□ -0.14
COL12A1Q99715 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 AC016694.1-201ENST00000434179 700 ntBASIC14.18□□□□□ -0.14
COL12A1Q99715 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.18□□□□□ -0.14
COL12A1Q99715 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.18□□□□□ -0.14
COL12A1Q99715 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.18□□□□□ -0.14
COL12A1Q99715 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC14.18□□□□□ -0.14
COL12A1Q99715 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.18□□□□□ -0.14
COL12A1Q99715 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL12A1Q99715 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC14.17□□□□□ -0.14
COL12A1Q99715 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.17□□□□□ -0.14
COL12A1Q99715 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
COL12A1Q99715 MIR3907-201ENST00000579424 151 ntBASIC14.17□□□□□ -0.14
COL12A1Q99715 MIR4741-201ENST00000579822 90 ntBASIC14.17□□□□□ -0.14
COL12A1Q99715 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.17□□□□□ -0.14
COL12A1Q99715 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.17□□□□□ -0.14
COL12A1Q99715 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC14.17□□□□□ -0.14
COL12A1Q99715 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC14.17□□□□□ -0.14
COL12A1Q99715 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC14.17□□□□□ -0.14
COL12A1Q99715 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.17□□□□□ -0.14
COL12A1Q99715 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 MIR1227-201ENST00000408484 88 ntBASIC14.17□□□□□ -0.14
COL12A1Q99715 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC14.17□□□□□ -0.14
COL12A1Q99715 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC14.17□□□□□ -0.14
COL12A1Q99715 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.17□□□□□ -0.14
COL12A1Q99715 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
COL12A1Q99715 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.17□□□□□ -0.14
COL12A1Q99715 AC108860.2-201ENST00000562760 2183 ntBASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms