Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 VENTXP5-201ENST00000523979 775 ntBASIC14.25□□□□□ -0.13
CMTM3Q96MX0 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 AC004817.3-201ENST00000602957 2129 ntBASIC14.25□□□□□ -0.13
CMTM3Q96MX0 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.25□□□□□ -0.13
CMTM3Q96MX0 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 SPDYE21P-201ENST00000413323 827 ntBASIC14.24□□□□□ -0.13
CMTM3Q96MX0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 LIN28AP1-201ENST00000429574 405 ntBASIC14.24□□□□□ -0.13
CMTM3Q96MX0 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 AC091167.2-201ENST00000579581 588 ntBASIC14.24□□□□□ -0.13
CMTM3Q96MX0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 AC136621.1-201ENST00000624017 2304 ntBASIC14.24□□□□□ -0.13
CMTM3Q96MX0 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.24□□□□□ -0.13
CMTM3Q96MX0 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.23□□□□□ -0.13
CMTM3Q96MX0 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 SLC25A3P1-201ENST00000443844 931 ntBASIC14.23□□□□□ -0.13
CMTM3Q96MX0 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.23□□□□□ -0.13
CMTM3Q96MX0 IGHV3-41-201ENST00000613121 348 ntBASIC14.23□□□□□ -0.13
CMTM3Q96MX0 HYMAI.1-201ENST00000620949 238 ntBASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms