Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 PRAL-201ENST00000624952 3286 ntBASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
ATG4AQ8WYN0 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.34
ATG4AQ8WYN0 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 AP002414.3-201ENST00000589352 1468 ntBASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 HNRNPDP1-201ENST00000439535 754 ntBASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 POU5F1P6-201ENST00000466990 990 ntBASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 RNPS1P1-201ENST00000507437 918 ntBASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 AC012640.2-201ENST00000561606 901 ntBASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 AC008667.4-201ENST00000607370 168 ntBASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 GGTLC5P-201ENST00000617623 998 ntBASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 AP001350.2-201ENST00000625104 1094 ntBASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 AC129492.6-201ENST00000611383 1305 ntBASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4AQ8WYN0 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 HCG4-201ENST00000418983 998 ntBASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms