Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 PAM16-215ENST00000577031 548 ntTSL 4 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 FAM8A3P-201ENST00000427218 844 ntBASIC25.49■■□□□ 1.67
VPS8Q8N3P4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 AC022144.1-201ENST00000602255 1580 ntBASIC25.49■■□□□ 1.67
VPS8Q8N3P4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC25.49■■□□□ 1.67
VPS8Q8N3P4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 AC087499.5-201ENST00000452760 1342 ntBASIC25.48■■□□□ 1.67
VPS8Q8N3P4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC25.48■■□□□ 1.67
VPS8Q8N3P4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 HNRNPA3P5-201ENST00000455201 833 ntBASIC25.48■■□□□ 1.67
VPS8Q8N3P4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
VPS8Q8N3P4 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 AC008738.7-201ENST00000609744 511 ntBASIC25.47■■□□□ 1.67
VPS8Q8N3P4 AC004840.1-201ENST00000636359 365 ntBASIC25.47■■□□□ 1.67
VPS8Q8N3P4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
VPS8Q8N3P4 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
VPS8Q8N3P4 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
VPS8Q8N3P4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.46■■□□□ 1.67
VPS8Q8N3P4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
VPS8Q8N3P4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC25.46■■□□□ 1.67
VPS8Q8N3P4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
VPS8Q8N3P4 RNA5SP421-201ENST00000516864 134 ntBASIC25.46■■□□□ 1.67
VPS8Q8N3P4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC25.46■■□□□ 1.67
VPS8Q8N3P4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC25.46■■□□□ 1.67
VPS8Q8N3P4 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
VPS8Q8N3P4 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
VPS8Q8N3P4 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms