Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 EMBP1-201ENST00000458200 901 ntBASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 MIR5100-201ENST00000579544 119 ntBASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 AL353801.3-201ENST00000609898 542 ntBASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PPP4R4Q6NUP7 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 AL596087.1-201ENST00000400979 1969 ntBASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 AC007967.3-201ENST00000434308 558 ntBASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 LINC02228-204ENST00000642115 2962 ntBASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.9■□□□□ 0.14
PPP4R4Q6NUP7 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PPP4R4Q6NUP7 FAM220CP-201ENST00000395253 831 ntBASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms