Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 HTR5BP-201ENST00000430851 1154 ntBASIC19.92■□□□□ 0.78
VPS53Q5VIR6 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 ADH5P3-201ENST00000433842 1137 ntBASIC19.92■□□□□ 0.78
VPS53Q5VIR6 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 AC055717.3-201ENST00000622967 595 ntBASIC19.92■□□□□ 0.78
VPS53Q5VIR6 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS53Q5VIR6 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 UPF3AP3-201ENST00000420996 769 ntBASIC19.91■□□□□ 0.78
VPS53Q5VIR6 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 MIR3909-201ENST00000579518 119 ntBASIC19.91■□□□□ 0.78
VPS53Q5VIR6 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 AC026691.1-201ENST00000602502 2017 ntBASIC19.91■□□□□ 0.78
VPS53Q5VIR6 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS53Q5VIR6 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms