Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 PCGF3-213ENST00000620529 1899 ntBASIC20.5■□□□□ 0.87
RC3H1Q5TC82 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 APOA1-205ENST00000375329 927 ntTSL 2 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 AC099336.1-201ENST00000417053 1171 ntBASIC20.5■□□□□ 0.87
RC3H1Q5TC82 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 BRI3BPP1-201ENST00000594224 787 ntBASIC20.5■□□□□ 0.87
RC3H1Q5TC82 AL022328.1-201ENST00000610050 478 ntBASIC20.5■□□□□ 0.87
RC3H1Q5TC82 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 KRT8P44-201ENST00000441609 1350 ntBASIC20.49■□□□□ 0.87
RC3H1Q5TC82 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 AMT-232ENST00000636199 1546 ntTSL 5 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 CU634019.7-201ENST00000624153 1185 ntBASIC20.49■□□□□ 0.87
RC3H1Q5TC82 FP236241.2-201ENST00000624906 1185 ntBASIC20.49■□□□□ 0.87
RC3H1Q5TC82 LINC01144-201ENST00000626198 1710 ntBASIC20.49■□□□□ 0.87
RC3H1Q5TC82 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RC3H1Q5TC82 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 AC004987.2-201ENST00000395959 1148 ntBASIC20.48■□□□□ 0.87
RC3H1Q5TC82 AL355994.2-201ENST00000447882 704 ntBASIC20.48■□□□□ 0.87
RC3H1Q5TC82 CSF2RBP1-201ENST00000447905 391 ntBASIC20.48■□□□□ 0.87
RC3H1Q5TC82 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 FO681548.1-201ENST00000455617 1132 ntBASIC20.48■□□□□ 0.87
RC3H1Q5TC82 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.48■□□□□ 0.87
RC3H1Q5TC82 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 CD74-212ENST00000524315 584 ntTSL 5 BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 USB1-203ENST00000539737 1212 ntTSL 2 BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 ENPP7P5-201ENST00000541031 1031 ntBASIC20.47■□□□□ 0.87
RC3H1Q5TC82 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 SPIB-207ENST00000597855 564 ntTSL 4 BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 GPR182-203ENST00000622922 591 ntBASIC20.47■□□□□ 0.87
RC3H1Q5TC82 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RC3H1Q5TC82 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms