Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CDH13P55290 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.2■□□□□ 0.18
CDH13P55290 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.2■□□□□ 0.18
CDH13P55290 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 AC073648.2-201ENST00000510116 352 ntBASIC16.2■□□□□ 0.18
CDH13P55290 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.2■□□□□ 0.18
CDH13P55290 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.2■□□□□ 0.18
CDH13P55290 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.2■□□□□ 0.18
CDH13P55290 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.2■□□□□ 0.18
CDH13P55290 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.2■□□□□ 0.18
CDH13P55290 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CDH13P55290 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CDH13P55290 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.2■□□□□ 0.18
CDH13P55290 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH13P55290 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CDH13P55290 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.2■□□□□ 0.18
CDH13P55290 AC129492.6-201ENST00000611383 1305 ntBASIC16.19■□□□□ 0.18
CDH13P55290 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.19■□□□□ 0.18
CDH13P55290 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CDH13P55290 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.19■□□□□ 0.18
CDH13P55290 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CDH13P55290 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.19■□□□□ 0.18
CDH13P55290 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
CDH13P55290 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.19■□□□□ 0.18
CDH13P55290 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.19■□□□□ 0.18
CDH13P55290 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
CDH13P55290 HNRNPDP1-201ENST00000439535 754 ntBASIC16.19■□□□□ 0.18
CDH13P55290 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.19■□□□□ 0.18
CDH13P55290 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.19■□□□□ 0.18
CDH13P55290 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.19■□□□□ 0.18
CDH13P55290 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CDH13P55290 AC008667.4-201ENST00000607370 168 ntBASIC16.19■□□□□ 0.18
CDH13P55290 TP73-AS1-207ENST00000624167 988 ntBASIC16.19■□□□□ 0.18
CDH13P55290 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.19■□□□□ 0.18
CDH13P55290 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 LINC01144-201ENST00000626198 1710 ntBASIC16.19■□□□□ 0.18
CDH13P55290 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.19■□□□□ 0.18
CDH13P55290 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
CDH13P55290 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH13P55290 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH13P55290 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.18■□□□□ 0.18
CDH13P55290 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.18■□□□□ 0.18
CDH13P55290 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.18■□□□□ 0.18
CDH13P55290 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDH13P55290 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
CDH13P55290 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
CDH13P55290 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CDH13P55290 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH13P55290 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDH13P55290 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.18■□□□□ 0.18
CDH13P55290 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.18■□□□□ 0.18
CDH13P55290 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CDH13P55290 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.18■□□□□ 0.18
CDH13P55290 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH13P55290 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDH13P55290 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.18■□□□□ 0.18
CDH13P55290 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms