Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.47■□□□□ 0.39
LIG3P49916 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.47■□□□□ 0.39
LIG3P49916 IL9RP2-201ENST00000423948 1312 ntBASIC17.47■□□□□ 0.39
LIG3P49916 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIG3P49916 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.46■□□□□ 0.39
LIG3P49916 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIG3P49916 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
LIG3P49916 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIG3P49916 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIG3P49916 AC009336.1-201ENST00000608941 1553 ntBASIC17.46■□□□□ 0.39
LIG3P49916 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIG3P49916 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIG3P49916 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.46■□□□□ 0.39
LIG3P49916 AP000347.1-202ENST00000435868 847 ntBASIC17.46■□□□□ 0.39
LIG3P49916 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.46■□□□□ 0.39
LIG3P49916 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.46■□□□□ 0.39
LIG3P49916 AC012640.2-201ENST00000561606 901 ntBASIC17.46■□□□□ 0.39
LIG3P49916 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.46■□□□□ 0.39
LIG3P49916 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.46■□□□□ 0.39
LIG3P49916 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
LIG3P49916 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.46■□□□□ 0.39
LIG3P49916 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
LIG3P49916 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.46■□□□□ 0.39
LIG3P49916 AC120114.3-201ENST00000611923 658 ntBASIC17.46■□□□□ 0.39
LIG3P49916 BX640515.1-201ENST00000617215 977 ntBASIC17.46■□□□□ 0.39
LIG3P49916 LINC01451-201ENST00000623792 534 ntBASIC17.46■□□□□ 0.39
LIG3P49916 AC116407.3-201ENST00000623905 1129 ntBASIC17.46■□□□□ 0.39
LIG3P49916 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.46■□□□□ 0.39
LIG3P49916 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.46■□□□□ 0.39
LIG3P49916 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIG3P49916 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIG3P49916 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.46■□□□□ 0.39
LIG3P49916 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIG3P49916 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
LIG3P49916 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIG3P49916 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIG3P49916 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.38
LIG3P49916 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIG3P49916 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LIG3P49916 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.45■□□□□ 0.38
LIG3P49916 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.45■□□□□ 0.38
LIG3P49916 LAGE3P1-201ENST00000425356 484 ntBASIC17.45■□□□□ 0.38
LIG3P49916 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LIG3P49916 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.45■□□□□ 0.38
LIG3P49916 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.45■□□□□ 0.38
LIG3P49916 AC008735.5-201ENST00000623544 497 ntBASIC17.45■□□□□ 0.38
LIG3P49916 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIG3P49916 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.45■□□□□ 0.38
LIG3P49916 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.44■□□□□ 0.38
LIG3P49916 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
LIG3P49916 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.44■□□□□ 0.38
LIG3P49916 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.44■□□□□ 0.38
LIG3P49916 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.44■□□□□ 0.38
LIG3P49916 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
LIG3P49916 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.44■□□□□ 0.38
LIG3P49916 AL022342.1-201ENST00000400363 863 ntBASIC17.44■□□□□ 0.38
LIG3P49916 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.44■□□□□ 0.38
LIG3P49916 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.44■□□□□ 0.38
LIG3P49916 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.44■□□□□ 0.38
LIG3P49916 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms