Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 TDH-203ENST00000531764 1110 ntBASIC19.01■□□□□ 0.63
CTCFP49711 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 MIR5189-201ENST00000577370 114 ntBASIC19.01■□□□□ 0.63
CTCFP49711 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CTCFP49711 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.01■□□□□ 0.63
CTCFP49711 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CTCFP49711 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CTCFP49711 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.01■□□□□ 0.63
CTCFP49711 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19■□□□□ 0.63
CTCFP49711 AC139713.2-201ENST00000641328 2723 ntBASIC19■□□□□ 0.63
CTCFP49711 AC090340.1-201ENST00000620778 4980 ntBASIC19■□□□□ 0.63
CTCFP49711 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 ZBTB12BP-201ENST00000314232 1122 ntBASIC19■□□□□ 0.63
CTCFP49711 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC19■□□□□ 0.63
CTCFP49711 RPL17P11-201ENST00000417593 544 ntBASIC19■□□□□ 0.63
CTCFP49711 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CTCFP49711 AL162726.2-201ENST00000438986 1017 ntBASIC19■□□□□ 0.63
CTCFP49711 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC19■□□□□ 0.63
CTCFP49711 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19■□□□□ 0.63
CTCFP49711 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19■□□□□ 0.63
CTCFP49711 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC19■□□□□ 0.63
CTCFP49711 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19■□□□□ 0.63
CTCFP49711 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19■□□□□ 0.63
CTCFP49711 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
CTCFP49711 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC19■□□□□ 0.63
CTCFP49711 KRT8P19-201ENST00000551916 1455 ntBASIC19■□□□□ 0.63
CTCFP49711 SLC22A20-204ENST00000530038 1673 ntBASIC19■□□□□ 0.63
CTCFP49711 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19■□□□□ 0.63
CTCFP49711 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19■□□□□ 0.63
CTCFP49711 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19■□□□□ 0.63
CTCFP49711 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19■□□□□ 0.63
CTCFP49711 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19■□□□□ 0.63
CTCFP49711 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CTCFP49711 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.99■□□□□ 0.63
CTCFP49711 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC18.99■□□□□ 0.63
CTCFP49711 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.99■□□□□ 0.63
CTCFP49711 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CTCFP49711 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CTCFP49711 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.99■□□□□ 0.63
CTCFP49711 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC18.99■□□□□ 0.63
CTCFP49711 AL355334.1-201ENST00000417713 215 ntBASIC18.99■□□□□ 0.63
CTCFP49711 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC18.99■□□□□ 0.63
CTCFP49711 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.99■□□□□ 0.63
CTCFP49711 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.99■□□□□ 0.63
CTCFP49711 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CTCFP49711 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CTCFP49711 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.99■□□□□ 0.63
CTCFP49711 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 KRT8P22-201ENST00000562317 1415 ntBASIC18.99■□□□□ 0.63
CTCFP49711 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.99■□□□□ 0.63
CTCFP49711 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTCFP49711 AC099398.1-201ENST00000567919 2776 ntBASIC18.98■□□□□ 0.63
CTCFP49711 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CTCFP49711 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms