Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
HOXA1P49639 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 AL645929.1-201ENST00000420084 975 ntBASIC13.79□□□□□ -0.2
HOXA1P49639 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC13.79□□□□□ -0.2
HOXA1P49639 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 P4HB-223ENST00000576390 439 ntTSL 4 BASIC13.79□□□□□ -0.2
HOXA1P49639 STK25P1-201ENST00000585406 838 ntBASIC13.79□□□□□ -0.2
HOXA1P49639 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
HOXA1P49639 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXA1P49639 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC13.79□□□□□ -0.2
HOXA1P49639 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 ING5-213ENST00000636051 4199 ntTSL 5 BASIC13.79□□□□□ -0.2
HOXA1P49639 CICP20-201ENST00000443330 2801 ntBASIC13.79□□□□□ -0.2
HOXA1P49639 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 KRT8P10-201ENST00000450021 1447 ntBASIC13.79□□□□□ -0.2
HOXA1P49639 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXA1P49639 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
HOXA1P49639 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXA1P49639 FUT8-AS1-201ENST00000621019 1521 ntBASIC13.79□□□□□ -0.2
HOXA1P49639 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXA1P49639 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
HOXA1P49639 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXA1P49639 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HOXA1P49639 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
HOXA1P49639 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXA1P49639 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXA1P49639 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXA1P49639 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC13.78□□□□□ -0.2
HOXA1P49639 TSPY22P-201ENST00000427496 604 ntBASIC13.78□□□□□ -0.2
HOXA1P49639 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC13.78□□□□□ -0.2
HOXA1P49639 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXA1P49639 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXA1P49639 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXA1P49639 HYMAI.1-201ENST00000620949 238 ntBASIC13.78□□□□□ -0.2
HOXA1P49639 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HOXA1P49639 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HOXA1P49639 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXA1P49639 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXA1P49639 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HOXA1P49639 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
HOXA1P49639 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
HOXA1P49639 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 GPR89P-201ENST00000407924 1495 ntBASIC13.78□□□□□ -0.2
HOXA1P49639 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 AL049757.1-201ENST00000616842 1596 ntBASIC13.78□□□□□ -0.2
HOXA1P49639 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 AL023775.1-201ENST00000454907 1746 ntBASIC13.78□□□□□ -0.2
HOXA1P49639 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXA1P49639 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXA1P49639 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXA1P49639 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXA1P49639 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HOXA1P49639 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HOXA1P49639 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
HOXA1P49639 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HOXA1P49639 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
HOXA1P49639 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms