Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
NKX2-1P43699 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
NKX2-1P43699 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
NKX2-1P43699 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX2-1P43699 ACE-203ENST00000413513 2237 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX2-1P43699 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
NKX2-1P43699 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX2-1P43699 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 DANCR-204ENST00000444958 709 ntTSL 3 BASIC13.59□□□□□ -0.23
NKX2-1P43699 NUS1P1-201ENST00000446295 882 ntBASIC13.59□□□□□ -0.23
NKX2-1P43699 SIGLEC30P-201ENST00000455569 941 ntBASIC13.59□□□□□ -0.23
NKX2-1P43699 RN7SL606P-201ENST00000472779 293 ntBASIC13.59□□□□□ -0.23
NKX2-1P43699 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC13.59□□□□□ -0.23
NKX2-1P43699 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
NKX2-1P43699 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX2-1P43699 AL592071.1-201ENST00000611956 408 ntBASIC13.59□□□□□ -0.23
NKX2-1P43699 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC13.59□□□□□ -0.23
NKX2-1P43699 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
NKX2-1P43699 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX2-1P43699 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX2-1P43699 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
NKX2-1P43699 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX2-1P43699 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX2-1P43699 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX2-1P43699 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NKX2-1P43699 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
NKX2-1P43699 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.58□□□□□ -0.23
NKX2-1P43699 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NKX2-1P43699 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NKX2-1P43699 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
NKX2-1P43699 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC13.58□□□□□ -0.24
NKX2-1P43699 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC13.58□□□□□ -0.24
NKX2-1P43699 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 AC013268.4-201ENST00000637413 2228 ntBASIC13.58□□□□□ -0.24
NKX2-1P43699 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.58□□□□□ -0.24
NKX2-1P43699 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC13.58□□□□□ -0.24
NKX2-1P43699 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC13.58□□□□□ -0.24
NKX2-1P43699 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 AC005521.1-201ENST00000393351 872 ntBASIC13.58□□□□□ -0.24
NKX2-1P43699 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC13.58□□□□□ -0.24
NKX2-1P43699 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC13.58□□□□□ -0.24
NKX2-1P43699 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC13.58□□□□□ -0.24
NKX2-1P43699 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
NKX2-1P43699 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
NKX2-1P43699 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
NKX2-1P43699 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.58□□□□□ -0.24
NKX2-1P43699 LINC02447-202ENST00000501888 2146 ntBASIC13.58□□□□□ -0.24
NKX2-1P43699 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
NKX2-1P43699 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
NKX2-1P43699 CDC14C-201ENST00000428251 1719 ntBASIC13.58□□□□□ -0.24
NKX2-1P43699 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.58□□□□□ -0.24
NKX2-1P43699 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
NKX2-1P43699 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
NKX2-1P43699 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC13.58□□□□□ -0.24
NKX2-1P43699 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
NKX2-1P43699 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
NKX2-1P43699 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX2-1P43699 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
NKX2-1P43699 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-1P43699 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-1P43699 AC073508.3-201ENST00000619697 1419 ntBASIC13.57□□□□□ -0.24
NKX2-1P43699 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-1P43699 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-1P43699 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms