Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXA9P31269 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXA9P31269 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.06■□□□□ 0.32
HOXA9P31269 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HOXA9P31269 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 ARSEP1-201ENST00000420443 635 ntBASIC17.06■□□□□ 0.32
HOXA9P31269 GPR53P-205ENST00000457298 1084 ntBASIC17.06■□□□□ 0.32
HOXA9P31269 GIMAP3P-201ENST00000495150 836 ntBASIC17.06■□□□□ 0.32
HOXA9P31269 AC011495.1-201ENST00000498085 584 ntBASIC17.06■□□□□ 0.32
HOXA9P31269 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.06■□□□□ 0.32
HOXA9P31269 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXA9P31269 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXA9P31269 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HOXA9P31269 SRD5A3P1-201ENST00000603021 949 ntBASIC17.06■□□□□ 0.32
HOXA9P31269 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXA9P31269 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.06■□□□□ 0.32
HOXA9P31269 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXA9P31269 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXA9P31269 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HOXA9P31269 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXA9P31269 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.05■□□□□ 0.32
HOXA9P31269 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HOXA9P31269 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXA9P31269 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXA9P31269 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXA9P31269 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.05■□□□□ 0.32
HOXA9P31269 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HOXA9P31269 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXA9P31269 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.05■□□□□ 0.32
HOXA9P31269 ATP5G2P4-201ENST00000442175 420 ntBASIC17.05■□□□□ 0.32
HOXA9P31269 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXA9P31269 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
HOXA9P31269 AC006538.1-201ENST00000567905 1585 ntBASIC17.05■□□□□ 0.32
HOXA9P31269 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.05■□□□□ 0.32
HOXA9P31269 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXA9P31269 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 AC080080.1-201ENST00000625121 2420 ntBASIC17.05■□□□□ 0.32
HOXA9P31269 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.05■□□□□ 0.32
HOXA9P31269 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
HOXA9P31269 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXA9P31269 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXA9P31269 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXA9P31269 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXA9P31269 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HOXA9P31269 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXA9P31269 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXA9P31269 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXA9P31269 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HOXA9P31269 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXA9P31269 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXA9P31269 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXA9P31269 PP12613-201ENST00000424958 2230 ntBASIC17.04■□□□□ 0.32
HOXA9P31269 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HOXA9P31269 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXA9P31269 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXA9P31269 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HOXA9P31269 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HOXA9P31269 AL512384.1-201ENST00000406683 331 ntBASIC17.04■□□□□ 0.32
HOXA9P31269 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXA9P31269 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
HOXA9P31269 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXA9P31269 RN7SL752P-201ENST00000463779 287 ntBASIC17.04■□□□□ 0.32
HOXA9P31269 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.04■□□□□ 0.32
HOXA9P31269 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXA9P31269 SPDYE18-201ENST00000510091 1050 ntBASIC17.04■□□□□ 0.32
HOXA9P31269 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms