Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG1P18858 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LIG1P18858 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
LIG1P18858 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG1P18858 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.07■□□□□ 0.64
LIG1P18858 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.07■□□□□ 0.64
LIG1P18858 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG1P18858 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG1P18858 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.07■□□□□ 0.64
LIG1P18858 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.07■□□□□ 0.64
LIG1P18858 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG1P18858 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.07■□□□□ 0.64
LIG1P18858 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG1P18858 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.07■□□□□ 0.64
LIG1P18858 AC006557.2-201ENST00000592985 1240 ntBASIC19.07■□□□□ 0.64
LIG1P18858 AL589182.2-201ENST00000619332 1049 ntBASIC19.07■□□□□ 0.64
LIG1P18858 MIR1199-201ENST00000621445 119 ntBASIC19.07■□□□□ 0.64
LIG1P18858 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.07■□□□□ 0.64
LIG1P18858 AF228730.7-201ENST00000641842 219 ntBASIC19.07■□□□□ 0.64
LIG1P18858 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG1P18858 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
LIG1P18858 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG1P18858 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG1P18858 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.07■□□□□ 0.64
LIG1P18858 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 AC006504.4-201ENST00000592118 1568 ntBASIC19.06■□□□□ 0.64
LIG1P18858 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG1P18858 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG1P18858 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG1P18858 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG1P18858 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.06■□□□□ 0.64
LIG1P18858 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 ELK2BP-201ENST00000415014 1224 ntBASIC19.06■□□□□ 0.64
LIG1P18858 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG1P18858 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG1P18858 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG1P18858 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.06■□□□□ 0.64
LIG1P18858 MIR4492-201ENST00000581627 80 ntBASIC19.06■□□□□ 0.64
LIG1P18858 BX640515.1-201ENST00000617215 977 ntBASIC19.06■□□□□ 0.64
LIG1P18858 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG1P18858 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
LIG1P18858 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC19.06■□□□□ 0.64
LIG1P18858 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LIG1P18858 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG1P18858 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
LIG1P18858 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
LIG1P18858 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIG1P18858 TOP3BP1-201ENST00000420768 1380 ntBASIC19.06■□□□□ 0.64
LIG1P18858 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 AL513477.1-201ENST00000602865 2407 ntBASIC19.05■□□□□ 0.64
LIG1P18858 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
LIG1P18858 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LIG1P18858 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
LIG1P18858 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.05■□□□□ 0.64
LIG1P18858 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.05■□□□□ 0.64
LIG1P18858 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.05■□□□□ 0.64
LIG1P18858 MIR940-201ENST00000401276 94 ntBASIC19.05■□□□□ 0.64
LIG1P18858 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.05■□□□□ 0.64
LIG1P18858 RPL13AP23-201ENST00000480739 586 ntBASIC19.05■□□□□ 0.64
LIG1P18858 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.05■□□□□ 0.64
LIG1P18858 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.05■□□□□ 0.64
LIG1P18858 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
LIG1P18858 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 AL356488.2-201ENST00000602755 427 ntBASIC19.05■□□□□ 0.64
LIG1P18858 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
LIG1P18858 AC117500.6-201ENST00000624871 588 ntBASIC19.05■□□□□ 0.64
LIG1P18858 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LIG1P18858 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.05■□□□□ 0.64
LIG1P18858 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.05■□□□□ 0.64
LIG1P18858 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms