Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 AKAP8P1-201ENST00000434743 1349 ntBASIC15.21■□□□□ 0.03
NKX2-2O95096 PMS2P7-201ENST00000506558 1336 ntBASIC15.21■□□□□ 0.03
NKX2-2O95096 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
NKX2-2O95096 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.21■□□□□ 0.03
NKX2-2O95096 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
NKX2-2O95096 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX2-2O95096 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
NKX2-2O95096 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
NKX2-2O95096 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX2-2O95096 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX2-2O95096 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 FAM58CP-201ENST00000435741 640 ntBASIC15.21■□□□□ 0.03
NKX2-2O95096 AP000347.1-202ENST00000435868 847 ntBASIC15.21■□□□□ 0.03
NKX2-2O95096 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.21■□□□□ 0.03
NKX2-2O95096 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.21■□□□□ 0.03
NKX2-2O95096 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX2-2O95096 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX2-2O95096 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.21■□□□□ 0.03
NKX2-2O95096 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.21■□□□□ 0.03
NKX2-2O95096 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
NKX2-2O95096 AC092902.6-201ENST00000641783 218 ntBASIC15.21■□□□□ 0.03
NKX2-2O95096 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
NKX2-2O95096 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.21■□□□□ 0.03
NKX2-2O95096 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
NKX2-2O95096 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.21■□□□□ 0.03
NKX2-2O95096 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
NKX2-2O95096 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX2-2O95096 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX2-2O95096 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX2-2O95096 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.21■□□□□ 0.02
NKX2-2O95096 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX2-2O95096 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
NKX2-2O95096 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.2■□□□□ 0.02
NKX2-2O95096 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
NKX2-2O95096 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.2■□□□□ 0.02
NKX2-2O95096 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.2■□□□□ 0.02
NKX2-2O95096 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.2■□□□□ 0.02
NKX2-2O95096 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.2■□□□□ 0.02
NKX2-2O95096 AL355306.1-201ENST00000415580 579 ntBASIC15.2■□□□□ 0.02
NKX2-2O95096 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.2■□□□□ 0.02
NKX2-2O95096 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
NKX2-2O95096 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.2■□□□□ 0.02
NKX2-2O95096 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.2■□□□□ 0.02
NKX2-2O95096 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.2■□□□□ 0.02
NKX2-2O95096 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.2■□□□□ 0.02
NKX2-2O95096 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.2■□□□□ 0.02
NKX2-2O95096 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.2■□□□□ 0.02
NKX2-2O95096 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
NKX2-2O95096 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.2■□□□□ 0.02
NKX2-2O95096 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
NKX2-2O95096 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
NKX2-2O95096 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
NKX2-2O95096 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
NKX2-2O95096 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
NKX2-2O95096 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.2■□□□□ 0.02
NKX2-2O95096 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX2-2O95096 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
NKX2-2O95096 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX2-2O95096 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX2-2O95096 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX2-2O95096 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX2-2O95096 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.19■□□□□ 0.02
NKX2-2O95096 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX2-2O95096 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.19■□□□□ 0.02
NKX2-2O95096 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX2-2O95096 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX2-2O95096 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.19■□□□□ 0.02
NKX2-2O95096 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.19■□□□□ 0.02
NKX2-2O95096 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.19■□□□□ 0.02
NKX2-2O95096 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms