Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VPS4BO75351 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4BO75351 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 AP006288.1-201ENST00000446065 395 ntBASIC16.25■□□□□ 0.19
VPS4BO75351 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VPS4BO75351 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4BO75351 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4BO75351 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.25■□□□□ 0.19
VPS4BO75351 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4BO75351 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4BO75351 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4BO75351 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4BO75351 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS4BO75351 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
VPS4BO75351 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
VPS4BO75351 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS4BO75351 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS4BO75351 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS4BO75351 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS4BO75351 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS4BO75351 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
VPS4BO75351 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
VPS4BO75351 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
VPS4BO75351 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.24■□□□□ 0.19
VPS4BO75351 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS4BO75351 MTDHP4-201ENST00000600287 670 ntBASIC16.24■□□□□ 0.19
VPS4BO75351 AC025062.2-201ENST00000605477 670 ntBASIC16.24■□□□□ 0.19
VPS4BO75351 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS4BO75351 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS4BO75351 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.24■□□□□ 0.19
VPS4BO75351 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS4BO75351 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS4BO75351 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS4BO75351 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
VPS4BO75351 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms