Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TP73-213ENST00000604479 1623 ntTSL 5 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 KRT8P37-201ENST00000451609 1420 ntBASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 AL583810.1-201ENST00000553344 1045 ntBASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 CU634019.7-201ENST00000624153 1185 ntBASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 FP236241.2-201ENST00000624906 1185 ntBASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 AC093525.8-201ENST00000624099 1342 ntBASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 RPL28-203ENST00000428193 573 ntTSL 2 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 RPL28-207ENST00000558815 616 ntTSL 2 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 AC244669.2-201ENST00000612320 853 ntBASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHANK3Q9BYB0 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 HNRNPUP1-201ENST00000554987 333 ntBASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC20.97■□□□□ 0.95
SHANK3Q9BYB0 DEK-201ENST00000244776 1441 ntTSL 2 BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 LBX2-201ENST00000341396 886 ntTSL 3 BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 TOMM22P5-201ENST00000416399 439 ntBASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 CD74-212ENST00000524315 584 ntTSL 5 BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 AC009542.2-202ENST00000619004 1067 ntBASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SHANK3Q9BYB0 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
SHANK3Q9BYB0 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 RIT1-205ENST00000539040 919 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 KRT90P-201ENST00000549264 1064 ntBASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 MSTO2P-201ENST00000314835 1709 ntBASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms