Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 ACTG1P3-201ENST00000431775 1114 ntBASIC16.08■□□□□ 0.16
VPS13AQ96RL7 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 AL607033.1-201ENST00000623900 1599 ntBASIC16.08■□□□□ 0.16
VPS13AQ96RL7 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 AC133539.2-201ENST00000604757 467 ntBASIC16.08■□□□□ 0.16
VPS13AQ96RL7 CU634019.7-201ENST00000624153 1185 ntBASIC16.08■□□□□ 0.16
VPS13AQ96RL7 FP236241.2-201ENST00000624906 1185 ntBASIC16.08■□□□□ 0.16
VPS13AQ96RL7 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 RARRES2P5-201ENST00000564013 466 ntBASIC16.07■□□□□ 0.16
VPS13AQ96RL7 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 MPDU1-223ENST00000582151 728 ntBASIC16.07■□□□□ 0.16
VPS13AQ96RL7 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.07■□□□□ 0.16
VPS13AQ96RL7 NEFHP1-201ENST00000412845 2629 ntBASIC16.07■□□□□ 0.16
VPS13AQ96RL7 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 AC104784.1-201ENST00000473096 294 ntBASIC16.07■□□□□ 0.16
VPS13AQ96RL7 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 AC244669.2-201ENST00000612320 853 ntBASIC16.07■□□□□ 0.16
VPS13AQ96RL7 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13AQ96RL7 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 RN7SL555P-201ENST00000584742 339 ntBASIC16.06■□□□□ 0.16
VPS13AQ96RL7 AC008687.7-202ENST00000637404 953 ntBASIC16.06■□□□□ 0.16
VPS13AQ96RL7 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 AC104306.2-201ENST00000451877 341 ntBASIC16.06■□□□□ 0.16
VPS13AQ96RL7 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS13AQ96RL7 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms