Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC002056.1-201ENST00000395613 760 ntBASIC12.79□□□□□ -0.36
CCDC140Q96MF4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 AC112191.1-201ENST00000523689 701 ntBASIC12.79□□□□□ -0.36
CCDC140Q96MF4 CFL1-202ENST00000524553 860 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 AC002347.1-201ENST00000569543 541 ntBASIC12.79□□□□□ -0.36
CCDC140Q96MF4 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 AC099522.2-201ENST00000607001 744 ntBASIC12.79□□□□□ -0.36
CCDC140Q96MF4 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 IMP4-203ENST00000409935 958 ntTSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 KRT18P34-201ENST00000488218 1270 ntBASIC12.78□□□□□ -0.36
CCDC140Q96MF4 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 AC091812.2-201ENST00000619081 385 ntBASIC12.78□□□□□ -0.36
CCDC140Q96MF4 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 AL161645.1-201ENST00000622716 1255 ntBASIC12.78□□□□□ -0.36
CCDC140Q96MF4 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 REXO1L8P-201ENST00000604378 1897 ntBASIC12.78□□□□□ -0.36
CCDC140Q96MF4 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 WASH6P-202ENST00000359512 1437 ntBASIC12.78□□□□□ -0.36
CCDC140Q96MF4 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CCDC140Q96MF4 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms