Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 AC064836.3-201ENST00000607928 673 ntBASIC15.91■□□□□ 0.14
VMP1Q96GC9 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 PMS2P7-201ENST00000506558 1336 ntBASIC15.91■□□□□ 0.14
VMP1Q96GC9 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VMP1Q96GC9 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
VMP1Q96GC9 HYMAI-201ENST00000635591 3347 ntBASIC15.89■□□□□ 0.13
VMP1Q96GC9 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 SLC25A1P3-201ENST00000395415 828 ntBASIC15.89■□□□□ 0.13
VMP1Q96GC9 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 AC087163.2-201ENST00000457299 853 ntBASIC15.89■□□□□ 0.13
VMP1Q96GC9 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
VMP1Q96GC9 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.89■□□□□ 0.13
VMP1Q96GC9 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VMP1Q96GC9 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.88■□□□□ 0.13
VMP1Q96GC9 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
VMP1Q96GC9 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
VMP1Q96GC9 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
VMP1Q96GC9 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VMP1Q96GC9 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VMP1Q96GC9 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms