Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 SPDYE11-202ENST00000450699 704 ntBASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 FAM86C2P-203ENST00000528684 1004 ntBASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 SPDYE9P-201ENST00000570642 692 ntBASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 SPDYE10P-202ENST00000612005 668 ntBASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 SPDYE8P-202ENST00000612377 668 ntBASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 AL513210.1-201ENST00000629608 234 ntBASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLIP3Q96DZ5 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 AL021920.2-201ENST00000624828 1351 ntBASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 HMGA1P7-201ENST00000406908 502 ntBASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 AC004461.1-201ENST00000412461 403 ntBASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 AC004449.1-201ENST00000564240 433 ntBASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 AC027612.4-201ENST00000605371 583 ntBASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 AC026120.1-201ENST00000611536 926 ntBASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 AC116353.5-201ENST00000638148 1699 ntBASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLIP3Q96DZ5 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 TOP3BP1-201ENST00000420768 1380 ntBASIC16■□□□□ 0.15
CLIP3Q96DZ5 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms