Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC004840.1-201ENST00000636359 365 ntBASIC16.53■□□□□ 0.24
HMGB4Q8WW32 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 CU639417.3-201ENST00000624240 1404 ntBASIC16.53■□□□□ 0.24
HMGB4Q8WW32 NOC2LP2-201ENST00000407594 1944 ntBASIC16.53■□□□□ 0.24
HMGB4Q8WW32 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB4Q8WW32 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 PCDHB17P-201ENST00000539533 2393 ntBASIC16.52■□□□□ 0.24
HMGB4Q8WW32 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 AL080243.2-201ENST00000418783 582 ntBASIC16.52■□□□□ 0.24
HMGB4Q8WW32 AC007274.1-201ENST00000439805 662 ntBASIC16.52■□□□□ 0.24
HMGB4Q8WW32 GNAQP1-201ENST00000444815 1067 ntBASIC16.52■□□□□ 0.24
HMGB4Q8WW32 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 TP53TG3HP-202ENST00000569755 579 ntBASIC16.52■□□□□ 0.24
HMGB4Q8WW32 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 AL133215.2-201ENST00000609242 977 ntBASIC16.52■□□□□ 0.24
HMGB4Q8WW32 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.52■□□□□ 0.24
HMGB4Q8WW32 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.52■□□□□ 0.23
HMGB4Q8WW32 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.52■□□□□ 0.23
HMGB4Q8WW32 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
HMGB4Q8WW32 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
HMGB4Q8WW32 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
HMGB4Q8WW32 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB4Q8WW32 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 AC140912.1-201ENST00000577171 1054 ntBASIC16.51■□□□□ 0.23
HMGB4Q8WW32 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 SNX33P1-201ENST00000592116 1762 ntBASIC16.51■□□□□ 0.23
HMGB4Q8WW32 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGB4Q8WW32 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms