Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 KRT8P10-201ENST00000450021 1447 ntBASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 AC126755.1-201ENST00000525846 6405 ntBASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 TP73-AS1-210ENST00000637775 1455 ntBASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 AC091607.1-201ENST00000490318 1060 ntBASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 BNIP3P18-201ENST00000593976 575 ntBASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
DEPDC4Q8N2C3 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 LINC00895-201ENST00000629028 1637 ntBASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 AC084866.2-201ENST00000509956 449 ntTSL 2 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 AL160237.2-201ENST00000556165 472 ntBASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 AL121912.1-201ENST00000603683 238 ntBASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms