Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP41Q3LFD5 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP41Q3LFD5 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP41Q3LFD5 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP41Q3LFD5 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP41Q3LFD5 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 CRB3P1-201ENST00000449338 276 ntBASIC17.52■□□□□ 0.4
USP41Q3LFD5 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP41Q3LFD5 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 AC105021.1-202ENST00000570572 669 ntBASIC17.52■□□□□ 0.4
USP41Q3LFD5 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 AC027307.3-201ENST00000594262 1100 ntBASIC17.52■□□□□ 0.4
USP41Q3LFD5 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 AC020765.3-201ENST00000613051 740 ntBASIC17.52■□□□□ 0.4
USP41Q3LFD5 AL035252.4-201ENST00000624174 288 ntBASIC17.52■□□□□ 0.4
USP41Q3LFD5 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.52■□□□□ 0.4
USP41Q3LFD5 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP41Q3LFD5 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP41Q3LFD5 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP41Q3LFD5 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.52■□□□□ 0.39
USP41Q3LFD5 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP41Q3LFD5 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.52■□□□□ 0.39
USP41Q3LFD5 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
USP41Q3LFD5 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
USP41Q3LFD5 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP41Q3LFD5 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
USP41Q3LFD5 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 AC087499.5-201ENST00000452760 1342 ntBASIC17.51■□□□□ 0.39
USP41Q3LFD5 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 PIN1P1-201ENST00000412108 996 ntBASIC17.51■□□□□ 0.39
USP41Q3LFD5 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 TEX28P1-201ENST00000613479 1221 ntBASIC17.51■□□□□ 0.39
USP41Q3LFD5 TEX28P2-201ENST00000617764 1221 ntBASIC17.51■□□□□ 0.39
USP41Q3LFD5 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.51■□□□□ 0.39
USP41Q3LFD5 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP41Q3LFD5 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.5■□□□□ 0.39
USP41Q3LFD5 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 AL512652.2-201ENST00000625156 1716 ntBASIC17.5■□□□□ 0.39
USP41Q3LFD5 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms