Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 AC132938.2-201ENST00000579188 680 ntBASIC15.92■□□□□ 0.14
COL28A1Q2UY09 SPTSSB-204ENST00000617024 1292 ntBASIC15.92■□□□□ 0.14
COL28A1Q2UY09 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 AL033527.4-201ENST00000641026 673 ntBASIC15.92■□□□□ 0.14
COL28A1Q2UY09 AL591163.1-201ENST00000641757 987 ntBASIC15.92■□□□□ 0.14
COL28A1Q2UY09 AL645728.2-201ENST00000641974 660 ntBASIC15.92■□□□□ 0.14
COL28A1Q2UY09 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 NKILA-202ENST00000614771 2598 ntBASIC15.91■□□□□ 0.14
COL28A1Q2UY09 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 FAM86MP-201ENST00000340703 885 ntBASIC15.91■□□□□ 0.14
COL28A1Q2UY09 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.91■□□□□ 0.14
COL28A1Q2UY09 AL512384.1-201ENST00000406683 331 ntBASIC15.91■□□□□ 0.14
COL28A1Q2UY09 HAUS4P1-201ENST00000406739 1145 ntBASIC15.91■□□□□ 0.14
COL28A1Q2UY09 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 AC022210.1-201ENST00000449856 793 ntBASIC15.91■□□□□ 0.14
COL28A1Q2UY09 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.91■□□□□ 0.14
COL28A1Q2UY09 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 AL161645.1-201ENST00000622716 1255 ntBASIC15.91■□□□□ 0.14
COL28A1Q2UY09 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 AL590787.1-201ENST00000568856 1315 ntBASIC15.91■□□□□ 0.14
COL28A1Q2UY09 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.91■□□□□ 0.14
COL28A1Q2UY09 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 REXO1L6P-201ENST00000603433 1515 ntBASIC15.9■□□□□ 0.14
COL28A1Q2UY09 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 RN7SL752P-201ENST00000463779 287 ntBASIC15.9■□□□□ 0.14
COL28A1Q2UY09 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
COL28A1Q2UY09 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms