Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RNF41-210ENST00000552244 716 ntTSL 3 BASIC11.68□□□□□ -0.54
PRKDCP78527 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 AL354718.3-201ENST00000616414 581 ntBASIC11.68□□□□□ -0.54
PRKDCP78527 CR382287.1-201ENST00000623954 586 ntBASIC11.68□□□□□ -0.54
PRKDCP78527 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC11.68□□□□□ -0.54
PRKDCP78527 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC11.68□□□□□ -0.54
PRKDCP78527 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC11.68□□□□□ -0.54
PRKDCP78527 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC11.68□□□□□ -0.54
PRKDCP78527 ACTG1P2-201ENST00000415776 1125 ntBASIC11.68□□□□□ -0.54
PRKDCP78527 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC11.68□□□□□ -0.54
PRKDCP78527 ACTG1P11-201ENST00000425411 1125 ntBASIC11.68□□□□□ -0.54
PRKDCP78527 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.68□□□□□ -0.54
PRKDCP78527 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC11.68□□□□□ -0.54
PRKDCP78527 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
PRKDCP78527 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
PRKDCP78527 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC11.68□□□□□ -0.54
PRKDCP78527 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC11.68□□□□□ -0.54
PRKDCP78527 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
PRKDCP78527 MSRA-203ENST00000441698 788 ntTSL 2 BASIC11.68□□□□□ -0.54
PRKDCP78527 SERPINA13P-202ENST00000478994 924 ntBASIC11.68□□□□□ -0.54
PRKDCP78527 KLK3-207ENST00000595952 969 ntTSL 3 BASIC11.68□□□□□ -0.54
PRKDCP78527 AC026979.3-201ENST00000607315 403 ntBASIC11.68□□□□□ -0.54
PRKDCP78527 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC11.68□□□□□ -0.54
PRKDCP78527 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC11.68□□□□□ -0.54
PRKDCP78527 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC11.68□□□□□ -0.54
PRKDCP78527 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 REXO1L8P-201ENST00000604378 1897 ntBASIC11.68□□□□□ -0.54
PRKDCP78527 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC11.68□□□□□ -0.54
PRKDCP78527 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
PRKDCP78527 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 CMC1-204ENST00000423894 549 ntTSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 ATP6V0CP2-201ENST00000469409 207 ntBASIC11.67□□□□□ -0.54
PRKDCP78527 AC025181.2-201ENST00000606994 802 ntBASIC11.67□□□□□ -0.54
PRKDCP78527 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC11.67□□□□□ -0.54
PRKDCP78527 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 RELA-227ENST00000615805 2236 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
PRKDCP78527 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 GMFG-209ENST00000600322 622 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 HSPB1P2-201ENST00000448722 546 ntBASIC11.67□□□□□ -0.54
PRKDCP78527 VDAC1P7-201ENST00000462417 847 ntBASIC11.67□□□□□ -0.54
PRKDCP78527 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC11.67□□□□□ -0.54
PRKDCP78527 AC104596.2-201ENST00000512793 793 ntBASIC11.67□□□□□ -0.54
PRKDCP78527 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 ACR-203ENST00000529621 708 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
PRKDCP78527 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC11.67□□□□□ -0.54
PRKDCP78527 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
PRKDCP78527 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms