Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GUK1-206ENST00000366723 845 ntTSL 5 BASIC19.69■□□□□ 0.74
BRCA1P38398 C1QBPP1-201ENST00000400117 770 ntBASIC19.69■□□□□ 0.74
BRCA1P38398 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 LDHBP1-201ENST00000455730 1119 ntBASIC19.69■□□□□ 0.74
BRCA1P38398 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC19.69■□□□□ 0.74
BRCA1P38398 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.69■□□□□ 0.74
BRCA1P38398 HNRNPA1P48-202ENST00000565308 961 ntBASIC19.69■□□□□ 0.74
BRCA1P38398 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.69■□□□□ 0.74
BRCA1P38398 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
BRCA1P38398 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 AL607033.1-201ENST00000623900 1599 ntBASIC19.69■□□□□ 0.74
BRCA1P38398 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
BRCA1P38398 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
BRCA1P38398 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.68■□□□□ 0.74
BRCA1P38398 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRCA1P38398 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRCA1P38398 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.68■□□□□ 0.74
BRCA1P38398 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRCA1P38398 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.68■□□□□ 0.74
BRCA1P38398 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
BRCA1P38398 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.68■□□□□ 0.74
BRCA1P38398 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRCA1P38398 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.68■□□□□ 0.74
BRCA1P38398 AC004898.1-201ENST00000451057 766 ntBASIC19.68■□□□□ 0.74
BRCA1P38398 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.68■□□□□ 0.74
BRCA1P38398 AP006547.1-201ENST00000563435 692 ntBASIC19.68■□□□□ 0.74
BRCA1P38398 MIR3619-201ENST00000579667 83 ntBASIC19.68■□□□□ 0.74
BRCA1P38398 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.68■□□□□ 0.74
BRCA1P38398 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC19.68■□□□□ 0.74
BRCA1P38398 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
BRCA1P38398 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.68■□□□□ 0.74
BRCA1P38398 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.68■□□□□ 0.74
BRCA1P38398 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.68■□□□□ 0.74
BRCA1P38398 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
BRCA1P38398 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 AC092053.1-201ENST00000605787 1936 ntBASIC19.67■□□□□ 0.74
BRCA1P38398 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
BRCA1P38398 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 Z93015.1-201ENST00000451718 390 ntBASIC19.67■□□□□ 0.74
BRCA1P38398 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.67■□□□□ 0.74
BRCA1P38398 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 AC107373.2-201ENST00000607735 490 ntBASIC19.67■□□□□ 0.74
BRCA1P38398 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.67■□□□□ 0.74
BRCA1P38398 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.67■□□□□ 0.74
BRCA1P38398 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC19.67■□□□□ 0.74
BRCA1P38398 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.67■□□□□ 0.74
BRCA1P38398 AKR7A2P1-201ENST00000460134 915 ntBASIC19.67■□□□□ 0.74
BRCA1P38398 AP001258.2-201ENST00000529891 490 ntBASIC19.67■□□□□ 0.74
BRCA1P38398 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC19.67■□□□□ 0.74
BRCA1P38398 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRCA1P38398 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
BRCA1P38398 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
BRCA1P38398 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.66■□□□□ 0.74
BRCA1P38398 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
BRCA1P38398 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
BRCA1P38398 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.66■□□□□ 0.74
BRCA1P38398 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19.66■□□□□ 0.74
BRCA1P38398 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.66■□□□□ 0.74
BRCA1P38398 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
BRCA1P38398 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.65■□□□□ 0.74
BRCA1P38398 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.65■□□□□ 0.74
BRCA1P38398 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms