Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.57■□□□□ 0.88
RFC4P35249 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
RFC4P35249 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
RFC4P35249 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.57■□□□□ 0.88
RFC4P35249 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
RFC4P35249 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RFC4P35249 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
RFC4P35249 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
RFC4P35249 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RFC4P35249 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
RFC4P35249 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC20.57■□□□□ 0.88
RFC4P35249 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
RFC4P35249 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 MFF-223ENST00000524634 647 ntTSL 2 BASIC20.57■□□□□ 0.88
RFC4P35249 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
RFC4P35249 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RFC4P35249 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.57■□□□□ 0.88
RFC4P35249 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RFC4P35249 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
RFC4P35249 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RFC4P35249 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC20.56■□□□□ 0.88
RFC4P35249 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
RFC4P35249 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
RFC4P35249 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 DEK-201ENST00000244776 1441 ntTSL 2 BASIC20.56■□□□□ 0.88
RFC4P35249 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 ACTBP11-201ENST00000436287 1126 ntBASIC20.56■□□□□ 0.88
RFC4P35249 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC20.56■□□□□ 0.88
RFC4P35249 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC20.56■□□□□ 0.88
RFC4P35249 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.56■□□□□ 0.88
RFC4P35249 AC025048.3-201ENST00000590609 569 ntBASIC20.56■□□□□ 0.88
RFC4P35249 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC20.56■□□□□ 0.88
RFC4P35249 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC20.56■□□□□ 0.88
RFC4P35249 AC005702.4-201ENST00000618393 416 ntBASIC20.56■□□□□ 0.88
RFC4P35249 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFC4P35249 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
RFC4P35249 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
RFC4P35249 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.56■□□□□ 0.88
RFC4P35249 AL391256.1-201ENST00000443260 1855 ntBASIC20.56■□□□□ 0.88
RFC4P35249 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.56■□□□□ 0.88
RFC4P35249 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
RFC4P35249 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC20.56■□□□□ 0.88
RFC4P35249 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RFC4P35249 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.55■□□□□ 0.88
RFC4P35249 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RFC4P35249 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.55■□□□□ 0.88
RFC4P35249 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.55■□□□□ 0.88
RFC4P35249 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 AL133338.1-201ENST00000565695 1517 ntBASIC20.55■□□□□ 0.88
RFC4P35249 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RFC4P35249 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.55■□□□□ 0.88
RFC4P35249 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
RFC4P35249 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RFC4P35249 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC20.55■□□□□ 0.88
RFC4P35249 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC20.55■□□□□ 0.88
RFC4P35249 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC20.55■□□□□ 0.88
RFC4P35249 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC20.55■□□□□ 0.88
RFC4P35249 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC20.55■□□□□ 0.88
RFC4P35249 PAM16-204ENST00000571941 674 ntTSL 3 BASIC20.55■□□□□ 0.88
RFC4P35249 RN7SL219P-201ENST00000582872 296 ntBASIC20.55■□□□□ 0.88
RFC4P35249 WNT11-204ENST00000621122 789 ntTSL 5 BASIC20.55■□□□□ 0.88
RFC4P35249 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RFC4P35249 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
RFC4P35249 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RFC4P35249 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms