Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 AF228730.5-201ENST00000530288 346 ntBASIC19.13■□□□□ 0.65
ERCC3P19447 RARRES2P9-201ENST00000565168 469 ntBASIC19.13■□□□□ 0.65
ERCC3P19447 AC018529.1-201ENST00000613063 361 ntBASIC19.13■□□□□ 0.65
ERCC3P19447 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.13■□□□□ 0.65
ERCC3P19447 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.13■□□□□ 0.65
ERCC3P19447 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
ERCC3P19447 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.13■□□□□ 0.65
ERCC3P19447 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 AC060834.1-201ENST00000443027 2032 ntBASIC19.13■□□□□ 0.65
ERCC3P19447 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.13■□□□□ 0.65
ERCC3P19447 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 AC011676.5-201ENST00000624864 2660 ntBASIC19.13■□□□□ 0.65
ERCC3P19447 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
ERCC3P19447 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC3P19447 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
ERCC3P19447 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
ERCC3P19447 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.12■□□□□ 0.65
ERCC3P19447 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.12■□□□□ 0.65
ERCC3P19447 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
ERCC3P19447 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.12■□□□□ 0.65
ERCC3P19447 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.12■□□□□ 0.65
ERCC3P19447 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.12■□□□□ 0.65
ERCC3P19447 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.12■□□□□ 0.65
ERCC3P19447 AP3S2-216ENST00000617003 1561 ntBASIC19.12■□□□□ 0.65
ERCC3P19447 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
ERCC3P19447 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.12■□□□□ 0.65
ERCC3P19447 AC063926.2-201ENST00000623766 1308 ntBASIC19.12■□□□□ 0.65
ERCC3P19447 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.12■□□□□ 0.65
ERCC3P19447 AC027369.6-201ENST00000525520 931 ntBASIC19.12■□□□□ 0.65
ERCC3P19447 AC005225.4-201ENST00000557330 545 ntBASIC19.12■□□□□ 0.65
ERCC3P19447 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.12■□□□□ 0.65
ERCC3P19447 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.12■□□□□ 0.65
ERCC3P19447 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
ERCC3P19447 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.12■□□□□ 0.65
ERCC3P19447 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC3P19447 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC3P19447 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.11■□□□□ 0.65
ERCC3P19447 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC3P19447 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC3P19447 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.11■□□□□ 0.65
ERCC3P19447 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC19.11■□□□□ 0.65
ERCC3P19447 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC3P19447 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ERCC3P19447 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ERCC3P19447 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC19.11■□□□□ 0.65
ERCC3P19447 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC3P19447 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC3P19447 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC3P19447 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC3P19447 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC3P19447 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.11■□□□□ 0.65
ERCC3P19447 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
ERCC3P19447 GOLGA6L11P-201ENST00000417252 1298 ntBASIC19.11■□□□□ 0.65
ERCC3P19447 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.11■□□□□ 0.65
ERCC3P19447 KRT18P34-201ENST00000488218 1270 ntBASIC19.11■□□□□ 0.65
ERCC3P19447 AC073389.1-201ENST00000595595 795 ntBASIC19.11■□□□□ 0.65
ERCC3P19447 AC003101.2-201ENST00000612557 442 ntBASIC19.11■□□□□ 0.65
ERCC3P19447 AC073592.8-201ENST00000624126 511 ntBASIC19.11■□□□□ 0.65
ERCC3P19447 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.11■□□□□ 0.65
ERCC3P19447 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ERCC3P19447 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ERCC3P19447 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.11■□□□□ 0.65
ERCC3P19447 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.11■□□□□ 0.65
ERCC3P19447 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ERCC3P19447 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
ERCC3P19447 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ERCC3P19447 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
ERCC3P19447 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.1■□□□□ 0.65
ERCC3P19447 AC084018.2-201ENST00000613093 2607 ntBASIC19.1■□□□□ 0.65
ERCC3P19447 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.1■□□□□ 0.65
ERCC3P19447 AC100757.3-201ENST00000622361 1406 ntBASIC19.1■□□□□ 0.65
ERCC3P19447 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
ERCC3P19447 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms