Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFRAP16234 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDGFRAP16234 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PDGFRAP16234 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.36■□□□□ 0.37
PDGFRAP16234 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
PDGFRAP16234 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
PDGFRAP16234 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.36■□□□□ 0.37
PDGFRAP16234 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PDGFRAP16234 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.36■□□□□ 0.37
PDGFRAP16234 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.36■□□□□ 0.37
PDGFRAP16234 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 AC112482.1-201ENST00000492080 688 ntBASIC17.36■□□□□ 0.37
PDGFRAP16234 AC109635.5-201ENST00000533593 962 ntBASIC17.36■□□□□ 0.37
PDGFRAP16234 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.36■□□□□ 0.37
PDGFRAP16234 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.36■□□□□ 0.37
PDGFRAP16234 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.36■□□□□ 0.37
PDGFRAP16234 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.36■□□□□ 0.37
PDGFRAP16234 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.36■□□□□ 0.37
PDGFRAP16234 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDGFRAP16234 AC092919.2-201ENST00000623631 1645 ntBASIC17.36■□□□□ 0.37
PDGFRAP16234 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PDGFRAP16234 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
PDGFRAP16234 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.35■□□□□ 0.37
PDGFRAP16234 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
PDGFRAP16234 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.35■□□□□ 0.37
PDGFRAP16234 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.35■□□□□ 0.37
PDGFRAP16234 AC092474.2-201ENST00000424288 719 ntBASIC17.35■□□□□ 0.37
PDGFRAP16234 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.35■□□□□ 0.37
PDGFRAP16234 AC068137.2-201ENST00000605408 478 ntBASIC17.35■□□□□ 0.37
PDGFRAP16234 AL078644.1-201ENST00000609881 752 ntBASIC17.35■□□□□ 0.37
PDGFRAP16234 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PDGFRAP16234 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.35■□□□□ 0.37
PDGFRAP16234 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.35■□□□□ 0.37
PDGFRAP16234 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PDGFRAP16234 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.35■□□□□ 0.37
PDGFRAP16234 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PDGFRAP16234 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDGFRAP16234 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.34■□□□□ 0.37
PDGFRAP16234 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDGFRAP16234 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDGFRAP16234 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.34■□□□□ 0.37
PDGFRAP16234 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDGFRAP16234 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDGFRAP16234 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PDGFRAP16234 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDGFRAP16234 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
PDGFRAP16234 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PDGFRAP16234 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDGFRAP16234 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.34■□□□□ 0.37
PDGFRAP16234 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDGFRAP16234 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.34■□□□□ 0.37
PDGFRAP16234 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.34■□□□□ 0.37
PDGFRAP16234 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.34■□□□□ 0.37
PDGFRAP16234 ALG1L5P-201ENST00000482043 771 ntBASIC17.34■□□□□ 0.37
PDGFRAP16234 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms