Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 RN7SL618P-201ENST00000477850 296 ntBASIC19.68■□□□□ 0.74
COL1A1P02452 GIMAP3P-201ENST00000495150 836 ntBASIC19.68■□□□□ 0.74
COL1A1P02452 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC19.68■□□□□ 0.74
COL1A1P02452 WASH4P-201ENST00000564273 1246 ntBASIC19.68■□□□□ 0.74
COL1A1P02452 IGHV3-72-202ENST00000621503 303 ntBASIC19.68■□□□□ 0.74
COL1A1P02452 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL1A1P02452 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC19.68■□□□□ 0.74
COL1A1P02452 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL1A1P02452 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL1A1P02452 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL1A1P02452 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL1A1P02452 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
COL1A1P02452 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL1A1P02452 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL1A1P02452 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL1A1P02452 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
COL1A1P02452 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
COL1A1P02452 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.68■□□□□ 0.74
COL1A1P02452 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.68■□□□□ 0.74
COL1A1P02452 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL1A1P02452 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL1A1P02452 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC19.67■□□□□ 0.74
COL1A1P02452 PTPA-220ENST00000436883 532 ntTSL 4 BASIC19.67■□□□□ 0.74
COL1A1P02452 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL1A1P02452 AC044860.1-202ENST00000559481 777 ntBASIC19.67■□□□□ 0.74
COL1A1P02452 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL1A1P02452 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.67■□□□□ 0.74
COL1A1P02452 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL1A1P02452 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
COL1A1P02452 LINC01144-201ENST00000626198 1710 ntBASIC19.67■□□□□ 0.74
COL1A1P02452 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL1A1P02452 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL1A1P02452 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL1A1P02452 AC020763.4-201ENST00000623414 4170 ntBASIC19.67■□□□□ 0.74
COL1A1P02452 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL1A1P02452 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.67■□□□□ 0.74
COL1A1P02452 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.67■□□□□ 0.74
COL1A1P02452 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
COL1A1P02452 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.67■□□□□ 0.74
COL1A1P02452 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
COL1A1P02452 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL1A1P02452 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL1A1P02452 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
COL1A1P02452 MIR4321-201ENST00000592276 80 ntBASIC19.67■□□□□ 0.74
COL1A1P02452 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC19.67■□□□□ 0.74
COL1A1P02452 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.66■□□□□ 0.74
COL1A1P02452 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
COL1A1P02452 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL1A1P02452 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
COL1A1P02452 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL1A1P02452 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL1A1P02452 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC19.66■□□□□ 0.74
COL1A1P02452 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
COL1A1P02452 RASL12-203ENST00000434605 982 ntTSL 2 BASIC19.66■□□□□ 0.74
COL1A1P02452 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC19.66■□□□□ 0.74
COL1A1P02452 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL1A1P02452 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC19.66■□□□□ 0.74
COL1A1P02452 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.66■□□□□ 0.74
COL1A1P02452 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC19.66■□□□□ 0.74
COL1A1P02452 CYP4F24P-201ENST00000586049 1580 ntBASIC19.66■□□□□ 0.74
COL1A1P02452 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.66■□□□□ 0.74
COL1A1P02452 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL1A1P02452 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL1A1P02452 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC19.66■□□□□ 0.74
COL1A1P02452 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.65■□□□□ 0.74
COL1A1P02452 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
COL1A1P02452 AC026471.1-201ENST00000564629 3026 ntBASIC19.65■□□□□ 0.74
COL1A1P02452 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
COL1A1P02452 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL1A1P02452 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL1A1P02452 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.65■□□□□ 0.74
COL1A1P02452 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COL1A1P02452 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL1A1P02452 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
COL1A1P02452 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COL1A1P02452 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COL1A1P02452 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL1A1P02452 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
COL1A1P02452 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
COL1A1P02452 AP006294.1-201ENST00000415407 339 ntBASIC19.65■□□□□ 0.74
COL1A1P02452 HIST3H2BA-201ENST00000436555 524 ntBASIC19.65■□□□□ 0.74
COL1A1P02452 RAB35-202ENST00000534951 939 ntTSL 2 BASIC19.65■□□□□ 0.74
COL1A1P02452 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC19.65■□□□□ 0.74
COL1A1P02452 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL1A1P02452 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL1A1P02452 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL1A1P02452 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms