Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 AC211486.1-202ENST00000416371 468 ntBASIC17.94■□□□□ 0.46
RNF40O75150 KRT18P2-201ENST00000447938 1258 ntBASIC17.94■□□□□ 0.46
RNF40O75150 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF40O75150 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.94■□□□□ 0.46
RNF40O75150 AC017007.3-201ENST00000479865 435 ntBASIC17.94■□□□□ 0.46
RNF40O75150 AC211476.1-201ENST00000503899 468 ntBASIC17.94■□□□□ 0.46
RNF40O75150 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.94■□□□□ 0.46
RNF40O75150 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
RNF40O75150 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.94■□□□□ 0.46
RNF40O75150 AL589182.2-201ENST00000619332 1049 ntBASIC17.94■□□□□ 0.46
RNF40O75150 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF40O75150 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
RNF40O75150 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF40O75150 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.94■□□□□ 0.46
RNF40O75150 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF40O75150 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF40O75150 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF40O75150 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
RNF40O75150 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.93■□□□□ 0.46
RNF40O75150 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
RNF40O75150 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF40O75150 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
RNF40O75150 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.93■□□□□ 0.46
RNF40O75150 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF40O75150 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.93■□□□□ 0.46
RNF40O75150 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.93■□□□□ 0.46
RNF40O75150 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.93■□□□□ 0.46
RNF40O75150 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.93■□□□□ 0.46
RNF40O75150 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF40O75150 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF40O75150 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF40O75150 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF40O75150 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF40O75150 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.93■□□□□ 0.46
RNF40O75150 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.93■□□□□ 0.46
RNF40O75150 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
RNF40O75150 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF40O75150 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
RNF40O75150 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 COX5BP2-201ENST00000392354 334 ntBASIC17.92■□□□□ 0.46
RNF40O75150 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.92■□□□□ 0.46
RNF40O75150 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.92■□□□□ 0.46
RNF40O75150 ELK2BP-201ENST00000415014 1224 ntBASIC17.92■□□□□ 0.46
RNF40O75150 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 AL020989.1-201ENST00000422979 469 ntBASIC17.92■□□□□ 0.46
RNF40O75150 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.92■□□□□ 0.46
RNF40O75150 DDX43P3-201ENST00000441064 443 ntBASIC17.92■□□□□ 0.46
RNF40O75150 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 AC009446.1-201ENST00000519840 808 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.92■□□□□ 0.46
RNF40O75150 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.92■□□□□ 0.46
RNF40O75150 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.92■□□□□ 0.46
RNF40O75150 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.92■□□□□ 0.46
RNF40O75150 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms