Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
LMX1BO60663 NCF1C-201ENST00000438382 1427 ntBASIC14.59□□□□□ -0.07
LMX1BO60663 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.59□□□□□ -0.07
LMX1BO60663 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 HYMAI-201ENST00000635591 3347 ntBASIC14.59□□□□□ -0.07
LMX1BO60663 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC14.59□□□□□ -0.07
LMX1BO60663 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.59□□□□□ -0.07
LMX1BO60663 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.59□□□□□ -0.07
LMX1BO60663 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.59□□□□□ -0.07
LMX1BO60663 PRYP5-201ENST00000451909 266 ntBASIC14.59□□□□□ -0.07
LMX1BO60663 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.59□□□□□ -0.07
LMX1BO60663 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.59□□□□□ -0.07
LMX1BO60663 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.59□□□□□ -0.07
LMX1BO60663 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC14.59□□□□□ -0.07
LMX1BO60663 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.59□□□□□ -0.07
LMX1BO60663 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 AC013467.2-201ENST00000605472 835 ntBASIC14.59□□□□□ -0.07
LMX1BO60663 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC14.59□□□□□ -0.07
LMX1BO60663 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.59□□□□□ -0.07
LMX1BO60663 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.59□□□□□ -0.07
LMX1BO60663 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
LMX1BO60663 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.59□□□□□ -0.07
LMX1BO60663 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC14.59□□□□□ -0.07
LMX1BO60663 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.59□□□□□ -0.07
LMX1BO60663 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.59□□□□□ -0.07
LMX1BO60663 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LMX1BO60663 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.59□□□□□ -0.07
LMX1BO60663 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
LMX1BO60663 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
LMX1BO60663 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
LMX1BO60663 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.07
LMX1BO60663 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LMX1BO60663 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LMX1BO60663 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
LMX1BO60663 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LMX1BO60663 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
LMX1BO60663 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.58□□□□□ -0.07
LMX1BO60663 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.58□□□□□ -0.08
LMX1BO60663 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LMX1BO60663 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.58□□□□□ -0.08
LMX1BO60663 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
LMX1BO60663 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.58□□□□□ -0.08
LMX1BO60663 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
LMX1BO60663 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LMX1BO60663 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.58□□□□□ -0.08
LMX1BO60663 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LMX1BO60663 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC14.58□□□□□ -0.08
LMX1BO60663 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.58□□□□□ -0.08
LMX1BO60663 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.58□□□□□ -0.08
LMX1BO60663 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.58□□□□□ -0.08
LMX1BO60663 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.58□□□□□ -0.08
LMX1BO60663 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.58□□□□□ -0.08
LMX1BO60663 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.58□□□□□ -0.08
LMX1BO60663 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
LMX1BO60663 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.58□□□□□ -0.08
LMX1BO60663 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.58□□□□□ -0.08
LMX1BO60663 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms