Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.73■□□□□ 0.11
PROM1O43490 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.73■□□□□ 0.11
PROM1O43490 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 GPAA1P2-202ENST00000606848 1787 ntBASIC15.73■□□□□ 0.11
PROM1O43490 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
PROM1O43490 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
PROM1O43490 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.73■□□□□ 0.11
PROM1O43490 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.73■□□□□ 0.11
PROM1O43490 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.73■□□□□ 0.11
PROM1O43490 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.73■□□□□ 0.11
PROM1O43490 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.73■□□□□ 0.11
PROM1O43490 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.73■□□□□ 0.11
PROM1O43490 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.73■□□□□ 0.11
PROM1O43490 AL031055.1-201ENST00000606362 631 ntBASIC15.73■□□□□ 0.11
PROM1O43490 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.73■□□□□ 0.11
PROM1O43490 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PROM1O43490 AC103702.1-201ENST00000548801 2630 ntBASIC15.73■□□□□ 0.11
PROM1O43490 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.73■□□□□ 0.11
PROM1O43490 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PROM1O43490 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.73■□□□□ 0.11
PROM1O43490 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PROM1O43490 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PROM1O43490 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
PROM1O43490 PMS2P7-201ENST00000506558 1336 ntBASIC15.72■□□□□ 0.11
PROM1O43490 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.72■□□□□ 0.11
PROM1O43490 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
PROM1O43490 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PROM1O43490 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PROM1O43490 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.72■□□□□ 0.11
PROM1O43490 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.72■□□□□ 0.11
PROM1O43490 AC074386.1-202ENST00000463561 864 ntBASIC15.72■□□□□ 0.11
PROM1O43490 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.72■□□□□ 0.11
PROM1O43490 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.72■□□□□ 0.11
PROM1O43490 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.72■□□□□ 0.11
PROM1O43490 PDPK2P-202ENST00000562415 1191 ntBASIC15.72■□□□□ 0.11
PROM1O43490 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.72■□□□□ 0.11
PROM1O43490 AC021097.1-201ENST00000607902 574 ntBASIC15.72■□□□□ 0.11
PROM1O43490 AC092865.6-201ENST00000642101 219 ntBASIC15.72■□□□□ 0.11
PROM1O43490 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PROM1O43490 ME2P1-201ENST00000426028 1970 ntBASIC15.72■□□□□ 0.11
PROM1O43490 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PROM1O43490 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
PROM1O43490 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
PROM1O43490 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.72■□□□□ 0.11
PROM1O43490 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.72■□□□□ 0.11
PROM1O43490 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PROM1O43490 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.72■□□□□ 0.11
PROM1O43490 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.72■□□□□ 0.11
PROM1O43490 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PROM1O43490 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PROM1O43490 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
PROM1O43490 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.71■□□□□ 0.11
PROM1O43490 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PROM1O43490 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms