Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.38□□□□□ -0.27
HMGB3O15347 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC13.38□□□□□ -0.27
HMGB3O15347 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 TBC1D3P5-201ENST00000579401 1545 ntBASIC13.38□□□□□ -0.27
HMGB3O15347 AC073347.1-201ENST00000421633 2643 ntBASIC13.38□□□□□ -0.27
HMGB3O15347 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.38□□□□□ -0.27
HMGB3O15347 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC13.38□□□□□ -0.27
HMGB3O15347 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.38□□□□□ -0.27
HMGB3O15347 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC13.38□□□□□ -0.27
HMGB3O15347 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.37□□□□□ -0.27
HMGB3O15347 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
HMGB3O15347 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.37□□□□□ -0.27
HMGB3O15347 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC13.37□□□□□ -0.27
HMGB3O15347 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.37□□□□□ -0.27
HMGB3O15347 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
HMGB3O15347 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC13.37□□□□□ -0.27
HMGB3O15347 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 CNP-204ENST00000472031 1019 ntTSL 2 BASIC13.37□□□□□ -0.27
HMGB3O15347 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC13.37□□□□□ -0.27
HMGB3O15347 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC13.37□□□□□ -0.27
HMGB3O15347 FITM1-202ENST00000559294 800 ntBASIC13.37□□□□□ -0.27
HMGB3O15347 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC13.37□□□□□ -0.27
HMGB3O15347 AC233702.5-201ENST00000584107 538 ntBASIC13.37□□□□□ -0.27
HMGB3O15347 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC13.37□□□□□ -0.27
HMGB3O15347 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.37□□□□□ -0.27
HMGB3O15347 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.37□□□□□ -0.27
HMGB3O15347 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
HMGB3O15347 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
HMGB3O15347 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC13.37□□□□□ -0.27
HMGB3O15347 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC13.37□□□□□ -0.27
HMGB3O15347 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC13.37□□□□□ -0.27
HMGB3O15347 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC13.37□□□□□ -0.27
HMGB3O15347 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HMGB3O15347 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.37□□□□□ -0.27
HMGB3O15347 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.36□□□□□ -0.27
HMGB3O15347 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HMGB3O15347 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 AC073957.3-201ENST00000609998 6758 ntBASIC13.36□□□□□ -0.27
HMGB3O15347 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
HMGB3O15347 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
HMGB3O15347 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 COX5BP2-201ENST00000392354 334 ntBASIC13.36□□□□□ -0.27
HMGB3O15347 AC096633.1-201ENST00000422446 749 ntBASIC13.36□□□□□ -0.27
HMGB3O15347 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HMGB3O15347 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HMGB3O15347 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
HMGB3O15347 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
HMGB3O15347 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.36□□□□□ -0.27
HMGB3O15347 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms