Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 FAM86LP-201ENST00000478302 853 ntBASIC12.59□□□□□ -0.39
COL6A5A8TX70 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 AL589702.1-201ENST00000641229 1509 ntBASIC12.59□□□□□ -0.39
COL6A5A8TX70 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 LINC00304-203ENST00000565008 1864 ntBASIC12.59□□□□□ -0.39
COL6A5A8TX70 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 AC106760.1-201ENST00000508690 800 ntBASIC12.59□□□□□ -0.39
COL6A5A8TX70 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 PRKXP1-201ENST00000561423 1122 ntBASIC12.59□□□□□ -0.39
COL6A5A8TX70 MPDU1-223ENST00000582151 728 ntBASIC12.59□□□□□ -0.39
COL6A5A8TX70 KLK3-207ENST00000595952 969 ntTSL 3 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 RN7SL736P-201ENST00000613111 269 ntBASIC12.59□□□□□ -0.39
COL6A5A8TX70 AC138649.2-201ENST00000615886 705 ntBASIC12.59□□□□□ -0.39
COL6A5A8TX70 AC005252.2-201ENST00000624630 1141 ntBASIC12.59□□□□□ -0.39
COL6A5A8TX70 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 PC-204ENST00000524491 1714 ntTSL 2 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
COL6A5A8TX70 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
COL6A5A8TX70 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 RN7SL181P-201ENST00000462921 277 ntBASIC12.58□□□□□ -0.39
COL6A5A8TX70 AC022137.2-201ENST00000503482 481 ntBASIC12.58□□□□□ -0.39
COL6A5A8TX70 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
COL6A5A8TX70 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 CLUHP6-201ENST00000580789 941 ntBASIC12.58□□□□□ -0.39
COL6A5A8TX70 METTL26-214ENST00000614890 801 ntTSL 3 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.58□□□□□ -0.39
COL6A5A8TX70 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 LY6E-208ENST00000520531 490 ntTSL 2 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 YRDCP1-201ENST00000621419 643 ntBASIC12.58□□□□□ -0.4
COL6A5A8TX70 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms