Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 MIR770-201ENST00000390219 98 ntBASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 RAB34-224ENST00000636513 888 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 AC022211.2-201ENST00000585075 2527 ntBASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 WDR53-203ENST00000429115 683 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 SPDYE14P-201ENST00000442619 822 ntBASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 CNN2P2-201ENST00000443536 909 ntBASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 CNN2P3-201ENST00000450201 906 ntBASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 AP002490.2-201ENST00000524791 560 ntBASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 MIR6080-201ENST00000617359 66 ntBASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 AL136317.3-201ENST00000618497 906 ntBASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 AP001059.3-201ENST00000619053 235 ntBASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP3Q9Y3E7 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 ALG1L8P-201ENST00000533887 760 ntBASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 DUX4L27-201ENST00000554796 1261 ntBASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 AC008677.1-201ENST00000519230 1561 ntBASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP3Q9Y3E7 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 AL603756.1-201ENST00000606511 2163 ntBASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms