Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
MKS1Q9NXB0 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.35■□□□□ 0.21
MKS1Q9NXB0 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 ATP5G2P1-201ENST00000433580 426 ntBASIC16.35■□□□□ 0.21
MKS1Q9NXB0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MKS1Q9NXB0 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 HYMAI-201ENST00000635591 3347 ntBASIC16.34■□□□□ 0.21
MKS1Q9NXB0 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 ELK2BP-201ENST00000415014 1224 ntBASIC16.34■□□□□ 0.21
MKS1Q9NXB0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 AC129492.6-201ENST00000611383 1305 ntBASIC16.34■□□□□ 0.21
MKS1Q9NXB0 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MKS1Q9NXB0 AC005622.1-201ENST00000636801 1703 ntBASIC16.33■□□□□ 0.21
MKS1Q9NXB0 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
MKS1Q9NXB0 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.33■□□□□ 0.21
MKS1Q9NXB0 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.33■□□□□ 0.21
MKS1Q9NXB0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
MKS1Q9NXB0 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.21
MKS1Q9NXB0 AC023824.1-201ENST00000562945 2975 ntBASIC16.33■□□□□ 0.21
MKS1Q9NXB0 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MKS1Q9NXB0 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
MKS1Q9NXB0 CROCCP1-201ENST00000426910 5675 ntBASIC16.33■□□□□ 0.2
MKS1Q9NXB0 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MKS1Q9NXB0 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MKS1Q9NXB0 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MKS1Q9NXB0 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MKS1Q9NXB0 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MKS1Q9NXB0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.33■□□□□ 0.2
MKS1Q9NXB0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms