Protein–RNA interactions for Protein: Q9NSC2

SALL1, Sal-like protein 1, humanhuman

Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL1Q9NSC2 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
SALL1Q9NSC2 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SALL1Q9NSC2 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SALL1Q9NSC2 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SALL1Q9NSC2 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.82■□□□□ 0.76
SALL1Q9NSC2 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SALL1Q9NSC2 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SALL1Q9NSC2 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.82■□□□□ 0.76
SALL1Q9NSC2 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 AC009477.1-201ENST00000452936 217 ntBASIC19.81■□□□□ 0.76
SALL1Q9NSC2 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 TERF1P3-201ENST00000505638 1227 ntBASIC19.81■□□□□ 0.76
SALL1Q9NSC2 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 LINC02560-201ENST00000596379 459 ntBASIC19.81■□□□□ 0.76
SALL1Q9NSC2 TEX28P1-201ENST00000613479 1221 ntBASIC19.81■□□□□ 0.76
SALL1Q9NSC2 TEX28P2-201ENST00000617764 1221 ntBASIC19.81■□□□□ 0.76
SALL1Q9NSC2 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SALL1Q9NSC2 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 MPI-209ENST00000564003 1195 ntTSL 2 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 CETN4P-206ENST00000642099 2168 ntBASIC19.8■□□□□ 0.76
SALL1Q9NSC2 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SALL1Q9NSC2 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 HLA-A-202ENST00000376806 1854 ntBASIC19.79■□□□□ 0.76
SALL1Q9NSC2 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 AC024267.1-201ENST00000582320 895 ntBASIC19.79■□□□□ 0.76
SALL1Q9NSC2 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 AC022144.1-201ENST00000602255 1580 ntBASIC19.79■□□□□ 0.76
SALL1Q9NSC2 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
SALL1Q9NSC2 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms