Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 AL136982.4-201ENST00000437689 1740 ntBASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 AL512652.2-201ENST00000625156 1716 ntBASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 PFN1P12-201ENST00000455938 534 ntBASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 AL359711.2-201ENST00000563105 872 ntBASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 AL390961.4-201ENST00000623958 2535 ntBASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.54■□□□□ 0.72
ZNF541Q9H0D2 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 NME4-207ENST00000450036 985 ntTSL 3 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 AP001889.1-201ENST00000525414 633 ntBASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 AP000812.2-201ENST00000538934 718 ntBASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 AL138688.1-201ENST00000624851 1594 ntBASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 AC007613.1-201ENST00000572811 2597 ntBASIC19.53■□□□□ 0.72
ZNF541Q9H0D2 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 RPL13AP20-201ENST00000459725 609 ntBASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 AC068587.3-201ENST00000526613 355 ntBASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF541Q9H0D2 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 142.8 ms