Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 AP002490.2-201ENST00000524791 560 ntBASIC14.53□□□□□ -0.08
NKX3-1Q99801 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX3-1Q99801 MIR3180-1-201ENST00000580374 94 ntBASIC14.53□□□□□ -0.08
NKX3-1Q99801 MIR3180-3-201ENST00000584616 94 ntBASIC14.53□□□□□ -0.08
NKX3-1Q99801 AL691432.3-201ENST00000621860 400 ntBASIC14.53□□□□□ -0.08
NKX3-1Q99801 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX3-1Q99801 AC063926.3-201ENST00000624734 5658 ntBASIC14.52□□□□□ -0.08
NKX3-1Q99801 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.52□□□□□ -0.08
NKX3-1Q99801 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NKX3-1Q99801 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.08
NKX3-1Q99801 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NKX3-1Q99801 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NKX3-1Q99801 LINC00895-201ENST00000629028 1637 ntBASIC14.52□□□□□ -0.08
NKX3-1Q99801 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.52□□□□□ -0.08
NKX3-1Q99801 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NKX3-1Q99801 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC14.52□□□□□ -0.08
NKX3-1Q99801 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.52□□□□□ -0.08
NKX3-1Q99801 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.52□□□□□ -0.08
NKX3-1Q99801 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
NKX3-1Q99801 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NKX3-1Q99801 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NKX3-1Q99801 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NKX3-1Q99801 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
NKX3-1Q99801 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.52□□□□□ -0.08
NKX3-1Q99801 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
NKX3-1Q99801 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 AP002414.1-201ENST00000391405 1147 ntBASIC14.52□□□□□ -0.09
NKX3-1Q99801 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 AC103702.1-201ENST00000548801 2630 ntBASIC14.52□□□□□ -0.09
NKX3-1Q99801 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.52□□□□□ -0.09
NKX3-1Q99801 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.52□□□□□ -0.09
NKX3-1Q99801 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX3-1Q99801 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.51□□□□□ -0.09
NKX3-1Q99801 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 AL596087.1-201ENST00000400979 1969 ntBASIC14.51□□□□□ -0.09
NKX3-1Q99801 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms